Variant report

Variant	rs16840130
Chromosome Location	chr3:132980753-132980754
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10428212	1.00[AFR][1000 genomes]
rs12107351	0.84[AFR][1000 genomes]
rs12108138	0.84[AFR][1000 genomes]
rs16840072	0.84[AFR][1000 genomes]
rs16840157	1.00[AFR][1000 genomes]
rs16840218	0.84[AFR][1000 genomes]
rs4292227	1.00[AFR][1000 genomes]
rs57407869	1.00[AFR][1000 genomes]
rs58668505	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530055	chr3:132380878-132982343	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv980103	chr3:132975869-132988869	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132957200-132981400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:132968000-132984200	Weak transcription	Psoas Muscle	Psoas
3	chr3:132976000-132981200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:132976400-132987000	Weak transcription	Fetal Lung	lung
5	chr3:132977200-132982200	Weak transcription	HSMM	muscle
6	chr3:132977200-132983800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:132977400-132986800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr3:132980400-132982400	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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