Variant report

Variant	rs12110045
Chromosome Location	chr5:113528282-113528283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12110041	1.00[AFR][1000 genomes]
rs12110221	0.84[AFR][1000 genomes]
rs12110227	0.84[AFR][1000 genomes]
rs17136330	0.84[AFR][1000 genomes]
rs17136332	0.84[AFR][1000 genomes]
rs17136340	0.84[AFR][1000 genomes]
rs17136361	1.00[AFR][1000 genomes]
rs17136382	0.97[AFR][1000 genomes]
rs17136383	0.97[AFR][1000 genomes]
rs28687690	0.97[AFR][1000 genomes]
rs4076578	0.84[AFR][1000 genomes]
rs4624786	0.97[AFR][1000 genomes]
rs6884723	1.00[AFR][1000 genomes]
rs7703150	1.00[AFR][1000 genomes]
rs7719362	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7730964	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882726	chr5:113404933-113555626	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2763899	chr5:113474771-113533857	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv599432	chr5:113486177-113561766	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113526600-113528400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:113527200-113528400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr5:113527200-113528400	Enhancers	NHEK	skin
4	chr5:113527200-113529200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:113527200-113529200	Weak transcription	Fetal Heart	heart
6	chr5:113527400-113528600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:113527400-113528600	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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