Variant report

Variant	rs12110221
Chromosome Location	chr5:113484244-113484245
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12110041	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12110045	0.84[AFR][1000 genomes]
rs12110227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17136330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17136332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17136340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17136361	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17136382	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17136383	0.81[AFR][1000 genomes]
rs28687690	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4076578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4624786	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6884723	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7703150	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7719362	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7730964	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882726	chr5:113404933-113555626	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1020064	chr5:113418512-113492951	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2763899	chr5:113474771-113533857	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113483400-113484800	Enhancers	Stomach Mucosa	stomach
2	chr5:113484200-113485200	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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