Variant report
| Variant | rs17136332 |
|---|---|
| Chromosome Location | chr5:113505279-113505280 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:113501339..113504130-chr5:113504587..113506234,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs12110041 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12110045 | 0.84[AFR][1000 genomes] |
| rs12110221 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12110227 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17136330 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17136340 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17136361 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17136382 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17136383 | 0.81[AFR][1000 genomes] |
| rs28687690 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4076578 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4624786 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6884723 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7703150 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7719362 | 1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7730964 | 0.96[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882726 | chr5:113404933-113555626 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv2763899 | chr5:113474771-113533857 | Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv599432 | chr5:113486177-113561766 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:113505200-113505600 | Enhancers | Fetal Heart | heart |
