Variant report

Variant	rs12110927
Chromosome Location	chr6:70776783-70776784
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10945195	0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12110922	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs16868473	0.96[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868489	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1885338	0.89[AFR][1000 genomes]
rs4637602	0.82[AFR][1000 genomes]
rs57799585	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58106918	0.89[AFR][1000 genomes]
rs58207835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58860000	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60022757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6455354	0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs6913378	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6918625	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs6939166	0.81[YRI][hapmap]
rs6939371	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940306	0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486359	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486380	0.89[AFR][1000 genomes]
rs73486385	0.89[AFR][1000 genomes]
rs73486387	0.89[AFR][1000 genomes]
rs7767650	0.95[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1026836	chr6:70727747-70849014	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv830683	chr6:70743422-70941190	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70767400-70809600	Weak transcription	Primary B cells from cord blood	blood
2	chr6:70770600-70777600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:70773800-70788400	Weak transcription	GM12878-XiMat	blood

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