Variant report

Variant	rs57799585
Chromosome Location	chr6:70769628-70769629
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10945195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12110922	0.81[AFR][1000 genomes]
rs12110927	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868473	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868489	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1885338	0.99[AFR][1000 genomes]
rs4637602	0.92[AFR][1000 genomes]
rs58086655	0.80[AFR][1000 genomes]
rs58106918	0.99[AFR][1000 genomes]
rs58207835	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58317608	0.80[AFR][1000 genomes]
rs58860000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60022757	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6913378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6918625	0.99[AFR][1000 genomes]
rs6939166	0.81[AFR][1000 genomes]
rs6939371	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486377	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486380	0.99[AFR][1000 genomes]
rs73486385	0.99[AFR][1000 genomes]
rs73486387	0.99[AFR][1000 genomes]
rs7767650	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1026836	chr6:70727747-70849014	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv830683	chr6:70743422-70941190	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70761800-70770000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:70767400-70809600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:70769000-70769800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links