Variant report

Variant	rs12111861
Chromosome Location	chr7:80776742-80776743
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11972689	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11974102	0.83[EUR][1000 genomes]
rs11975948	0.83[EUR][1000 genomes]
rs11976314	0.83[EUR][1000 genomes]
rs11977048	0.83[EUR][1000 genomes]
rs1397008	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1509912	0.83[EUR][1000 genomes]
rs35141375	0.84[EUR][1000 genomes]
rs6467590	0.81[EUR][1000 genomes]
rs7776566	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7778696	0.83[EUR][1000 genomes]
rs7794312	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7794577	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7794595	0.83[EUR][1000 genomes]
rs7798421	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7802063	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7809013	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7810096	0.83[EUR][1000 genomes]
rs980966	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv888556	chr7:80695828-80797794	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80763200-80780200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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