Variant report

Variant	rs6467590
Chromosome Location	chr7:80784264-80784265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:80783452..80785528-chr7:80926720..80928385,2	MCF-7	breast:
2	chr7:80781349..80783121-chr7:80784123..80785683,2	K562	blood:
3	chr7:80783252..80785229-chr7:80787279..80788864,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1024548	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10264882	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11972689	0.91[EUR][1000 genomes]
rs11974102	0.91[EUR][1000 genomes]
rs11975023	0.89[EUR][1000 genomes]
rs11975948	0.92[EUR][1000 genomes]
rs11976314	0.92[EUR][1000 genomes]
rs11977048	0.92[EUR][1000 genomes]
rs12111861	0.81[EUR][1000 genomes]
rs12666916	0.86[EUR][1000 genomes]
rs13228254	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13242185	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397008	0.92[EUR][1000 genomes]
rs1397009	0.87[EUR][1000 genomes]
rs1509912	0.92[EUR][1000 genomes]
rs1605917	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16887017	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17616148	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1859678	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327704	0.81[EUR][1000 genomes]
rs34252288	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35141375	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56034302	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62467422	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6956639	0.93[ASN][1000 genomes]
rs6957595	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6967382	0.87[EUR][1000 genomes]
rs6967567	0.87[EUR][1000 genomes]
rs7776566	0.91[EUR][1000 genomes]
rs7778696	0.92[EUR][1000 genomes]
rs7779992	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788722	0.84[EUR][1000 genomes]
rs7794312	0.91[EUR][1000 genomes]
rs7794577	0.92[EUR][1000 genomes]
rs7794595	0.92[EUR][1000 genomes]
rs7795202	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7797263	0.87[EUR][1000 genomes]
rs7798421	0.92[EUR][1000 genomes]
rs7802063	0.94[EUR][1000 genomes]
rs7809013	0.92[EUR][1000 genomes]
rs7810096	0.92[EUR][1000 genomes]
rs980966	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv888556	chr7:80695828-80797794	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80780600-80784400	Weak transcription	HMEC	breast
2	chr7:80780600-80787000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:80780600-80791000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:80780800-80785200	Weak transcription	Brain Anterior Caudate	brain
5	chr7:80781200-80784800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:80781200-80790000	Weak transcription	HSMM	muscle
7	chr7:80781400-80784400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:80781400-80784800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:80782800-80785400	Enhancers	HepG2	liver
10	chr7:80783000-80788400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:80783000-80788600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr7:80783200-80787800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr7:80783200-80788200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr7:80783400-80784800	Enhancers	A549	lung
15	chr7:80783400-80785000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr7:80783400-80785000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr7:80783400-80788000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr7:80783600-80784400	Enhancers	H9 Cell Line	embryonic stem cell
19	chr7:80783600-80785600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr7:80783600-80785600	Enhancers	Fetal Intestine Small	intestine
21	chr7:80784000-80785000	Weak transcription	Fetal Kidney	kidney
22	chr7:80784000-80785200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr7:80784000-80787600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr7:80784000-80788000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr7:80784200-80785000	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr7:80784200-80785000	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr7:80784200-80785800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:80784200-80788600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:80784200-80789000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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