Variant report

Variant	rs34252288
Chromosome Location	chr7:80792884-80792885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:80545430..80553146-chr7:80785929..80793151,13	MCF-7	breast:
2	chr7:80792450..80794527-chr7:80797989..80800904,2	MCF-7	breast:
3	chr7:80548267..80551645-chr7:80792812..80798041,5	MCF-7	breast:
4	chr7:80792689..80794553-chr7:80826673..80828742,2	K562	blood:
5	chr7:80695425..80696985-chr7:80792014..80793574,2	MCF-7	breast:
6	chr7:80570519..80573316-chr7:80792715..80798037,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075223	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1024548	0.88[EUR][1000 genomes]
rs10264882	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11972689	0.84[EUR][1000 genomes]
rs11974102	0.83[EUR][1000 genomes]
rs11975023	0.84[EUR][1000 genomes]
rs11975948	0.84[EUR][1000 genomes]
rs11976314	0.84[EUR][1000 genomes]
rs11977048	0.84[EUR][1000 genomes]
rs12666916	0.82[EUR][1000 genomes]
rs13228254	0.93[ASN][1000 genomes]
rs13242185	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397008	0.85[EUR][1000 genomes]
rs1509912	0.84[EUR][1000 genomes]
rs1605917	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16887017	0.89[EUR][1000 genomes]
rs17616148	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1859678	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35141375	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56034302	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62467422	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467590	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6956639	0.93[ASN][1000 genomes]
rs6957595	0.93[ASN][1000 genomes]
rs7776566	0.83[EUR][1000 genomes]
rs7778696	0.84[EUR][1000 genomes]
rs7779992	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7794312	0.84[EUR][1000 genomes]
rs7794577	0.85[EUR][1000 genomes]
rs7794595	0.84[EUR][1000 genomes]
rs7795202	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7798421	0.85[EUR][1000 genomes]
rs7802063	0.82[EUR][1000 genomes]
rs7809013	0.85[EUR][1000 genomes]
rs7810096	0.84[EUR][1000 genomes]
rs980966	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv888556	chr7:80695828-80797794	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80785200-80796400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:80790000-80793000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr7:80790400-80793400	Enhancers	A549	lung
4	chr7:80790600-80793000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:80792000-80793000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:80792400-80793000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:80792600-80793000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:80792600-80799600	Weak transcription	Osteobl	bone
9	chr7:80792600-80803000	Weak transcription	K562	blood
10	chr7:80792800-80793000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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