Variant report

Variant	rs1605917
Chromosome Location	chr7:80795578-80795579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:80788038..80791953-chr7:80793633..80797401,3	MCF-7	breast:
2	chr7:80794786..80796336-chr7:80796368..80797899,2	MCF-7	breast:
3	chr7:80548267..80551645-chr7:80792812..80798041,5	MCF-7	breast:
4	chr7:80547175..80549639-chr7:80793412..80796966,3	MCF-7	breast:
5	chr7:80570519..80573316-chr7:80792715..80798037,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075223	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1024548	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10264882	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11972689	0.92[EUR][1000 genomes]
rs11974102	0.92[EUR][1000 genomes]
rs11975023	0.92[EUR][1000 genomes]
rs11975948	0.92[EUR][1000 genomes]
rs11976314	0.92[EUR][1000 genomes]
rs11977048	0.92[EUR][1000 genomes]
rs12666916	0.89[EUR][1000 genomes]
rs13228254	0.93[ASN][1000 genomes]
rs13242185	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397008	0.93[EUR][1000 genomes]
rs1397009	0.87[EUR][1000 genomes]
rs1509912	0.92[EUR][1000 genomes]
rs16887017	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17616148	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1859678	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327704	0.82[EUR][1000 genomes]
rs34252288	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35141375	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56034302	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62467422	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467590	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6956639	0.93[ASN][1000 genomes]
rs6957595	0.93[ASN][1000 genomes]
rs6967382	0.87[EUR][1000 genomes]
rs6967567	0.87[EUR][1000 genomes]
rs7776566	0.92[EUR][1000 genomes]
rs7778696	0.92[EUR][1000 genomes]
rs7779992	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788722	0.85[EUR][1000 genomes]
rs7794312	0.92[EUR][1000 genomes]
rs7794577	0.93[EUR][1000 genomes]
rs7794595	0.92[EUR][1000 genomes]
rs7795202	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7797263	0.87[EUR][1000 genomes]
rs7798421	0.93[EUR][1000 genomes]
rs7802063	0.90[EUR][1000 genomes]
rs7809013	0.93[EUR][1000 genomes]
rs7810096	0.92[EUR][1000 genomes]
rs980966	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv888556	chr7:80695828-80797794	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80785200-80796400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:80792600-80799600	Weak transcription	Osteobl	bone
3	chr7:80792600-80803000	Weak transcription	K562	blood
4	chr7:80793400-80798800	Weak transcription	A549	lung

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