Variant report

Variant	rs1859678
Chromosome Location	chr7:80827037-80827038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:80821792..80824304-chr7:80825021..80828118,3	MCF-7	breast:
2	chr7:80792689..80794553-chr7:80826673..80828742,2	K562	blood:
3	chr7:80820849..80823481-chr7:80826763..80829018,2	K562	blood:
4	chr7:80820849..80823481-chr7:80826038..80829018,5	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1024548	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10264882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11972689	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs11972965	0.84[YRI][hapmap]
rs11974102	0.88[EUR][1000 genomes]
rs11975023	0.91[EUR][1000 genomes]
rs11975948	0.89[EUR][1000 genomes]
rs11976314	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs11977048	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs12666916	0.94[EUR][1000 genomes]
rs13228254	0.93[ASN][1000 genomes]
rs13242185	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397008	0.89[EUR][1000 genomes]
rs1397009	0.84[EUR][1000 genomes]
rs1509912	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs1605917	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16887017	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17616148	0.95[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327703	0.85[CEU][hapmap]
rs327704	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs327705	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs327706	0.92[CEU][hapmap]
rs327708	0.88[CEU][hapmap]
rs327710	1.00[CEU][hapmap]
rs34252288	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35141375	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56034302	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62467422	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467590	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6956639	0.93[ASN][1000 genomes]
rs6957595	0.93[ASN][1000 genomes]
rs6967382	0.84[EUR][1000 genomes]
rs6967567	0.84[EUR][1000 genomes]
rs7776566	0.88[EUR][1000 genomes]
rs7778696	0.89[EUR][1000 genomes]
rs7779992	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788722	0.81[EUR][1000 genomes]
rs7794312	0.88[EUR][1000 genomes]
rs7794577	0.89[EUR][1000 genomes]
rs7794595	0.89[EUR][1000 genomes]
rs7795202	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7797263	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs7798421	0.89[EUR][1000 genomes]
rs7802063	0.86[EUR][1000 genomes]
rs7809013	0.89[EUR][1000 genomes]
rs7810096	0.89[EUR][1000 genomes]
rs980966	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv888557	chr7:80813081-80917148	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1023149	chr7:80817550-80928090	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv967432	chr7:80821241-80828983	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80826800-80827800	Enhancers	K562	blood
2	chr7:80827000-80827200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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