Variant report

Variant	rs327704
Chromosome Location	chr7:80830433-80830434
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:80821320..80824042-chr7:80830231..80831994,2	MCF-7	breast:
2	chr7:80819982..80822822-chr7:80829998..80832398,2	MCF-7	breast:
3	chr7:80548873..80550374-chr7:80829934..80832081,2	MCF-7	breast:
4	chr7:80828235..80830977-chr7:80837024..80839340,2	K562	blood:

Variant related genes	Relation type
ENSG00000226671	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1024548	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs10264882	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs11972689	0.96[CEU][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11974102	0.86[EUR][1000 genomes]
rs11975948	0.87[EUR][1000 genomes]
rs11976314	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs11977048	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs12666916	0.81[EUR][1000 genomes]
rs13242185	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs1397008	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1397009	0.83[EUR][1000 genomes]
rs1509912	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs1605917	0.82[EUR][1000 genomes]
rs16887017	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs17616148	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs1859678	0.86[EUR][1000 genomes]
rs327703	0.85[CEU][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes]
rs327705	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs327706	0.81[CEU][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes]
rs327708	0.82[CEU][hapmap];0.90[AFR][1000 genomes]
rs327710	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs56034302	0.83[EUR][1000 genomes]
rs62467422	0.82[EUR][1000 genomes]
rs6467590	0.81[EUR][1000 genomes]
rs6967382	0.83[EUR][1000 genomes]
rs6967567	0.83[EUR][1000 genomes]
rs7776566	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7778696	0.87[EUR][1000 genomes]
rs7779992	0.82[EUR][1000 genomes]
rs7788722	0.81[EUR][1000 genomes]
rs7794312	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7794577	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7794595	0.87[EUR][1000 genomes]
rs7795202	0.82[EUR][1000 genomes]
rs7797263	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs7798421	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7802063	0.84[EUR][1000 genomes]
rs7809013	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7810096	0.87[EUR][1000 genomes]
rs980966	0.96[CEU][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv888557	chr7:80813081-80917148	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1023149	chr7:80817550-80928090	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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