Variant report

Variant	rs7802063
Chromosome Location	chr7:80782991-80782992
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80781139..80783357-chr7:80784311..80786613,2	MCF-7	breast:
2	chr7:80781349..80783121-chr7:80784123..80785683,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1024548	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs10264882	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs11972689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11974102	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11975023	0.83[EUR][1000 genomes]
rs11975948	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11976314	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11977048	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11978732	0.89[TSI][hapmap]
rs12111861	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12666916	0.81[EUR][1000 genomes]
rs13242185	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs1397008	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1397009	0.91[EUR][1000 genomes]
rs1509911	0.81[CEU][hapmap]
rs1509912	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1605917	0.90[EUR][1000 genomes]
rs16887017	0.84[CEU][hapmap];0.89[EUR][1000 genomes]
rs17616148	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs1859678	0.86[EUR][1000 genomes]
rs327703	0.88[CEU][hapmap]
rs327704	0.96[CEU][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs327705	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs327706	0.92[CEU][hapmap]
rs327708	0.92[CEU][hapmap]
rs327710	0.96[CEU][hapmap]
rs34252288	0.82[EUR][1000 genomes]
rs35141375	0.91[EUR][1000 genomes]
rs56034302	0.89[EUR][1000 genomes]
rs62467422	0.91[EUR][1000 genomes]
rs6467590	0.94[EUR][1000 genomes]
rs6967382	0.91[EUR][1000 genomes]
rs6967567	0.91[EUR][1000 genomes]
rs7776566	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7778696	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7779992	0.91[EUR][1000 genomes]
rs7788722	0.88[EUR][1000 genomes]
rs7794312	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7794577	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7794595	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7795202	0.91[EUR][1000 genomes]
rs7797263	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs7797400	0.82[TSI][hapmap]
rs7798421	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7809013	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7810096	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs980966	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv888556	chr7:80695828-80797794	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80778400-80783400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:80780600-80783400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:80780600-80783400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr7:80780600-80784400	Weak transcription	HMEC	breast
5	chr7:80780600-80787000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:80780600-80791000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:80780800-80785200	Weak transcription	Brain Anterior Caudate	brain
8	chr7:80781000-80783000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:80781200-80783400	Weak transcription	A549	lung
10	chr7:80781200-80784800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:80781200-80790000	Weak transcription	HSMM	muscle
12	chr7:80781400-80783000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:80781400-80784400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:80781400-80784800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:80781800-80783400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:80782800-80785400	Enhancers	HepG2	liver

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