Variant report

Variant	rs12114774
Chromosome Location	chr8:35530345-35530346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10092757	0.82[AMR][1000 genomes]
rs28449348	0.85[AMR][1000 genomes]
rs28497090	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28544500	0.85[AMR][1000 genomes]
rs28660087	0.85[AMR][1000 genomes]
rs28676752	0.85[AMR][1000 genomes]
rs28755800	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs55987331	0.82[AMR][1000 genomes]
rs56139060	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs56200409	0.88[AMR][1000 genomes]
rs58748125	0.85[AMR][1000 genomes]
rs66622867	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs68134897	0.85[AMR][1000 genomes]
rs6990664	0.88[AMR][1000 genomes]
rs7009470	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7841869	0.85[AMR][1000 genomes]
rs7845368	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv831285	chr8:35485874-35648117	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35528600-35531000	Enhancers	Brain Germinal Matrix	brain
2	chr8:35529000-35530400	Enhancers	Fetal Brain Male	brain
3	chr8:35529400-35531000	Enhancers	Fetal Brain Female	brain
4	chr8:35529800-35530600	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr8:35530000-35530800	Enhancers	Fetal Kidney	kidney
6	chr8:35530200-35562800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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