Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10092757	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12114774	0.82[AMR][1000 genomes]
rs12114974	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16884195	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1837347	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2018344	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28449348	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28497090	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28544500	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28660087	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28676752	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28755800	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56139060	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56200409	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57413160	0.84[ASN][1000 genomes]
rs58748125	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59877348	0.84[ASN][1000 genomes]
rs66622867	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68134897	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6983497	0.94[EUR][1000 genomes]
rs6990664	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7009470	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7010859	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7016917	0.94[EUR][1000 genomes]
rs7841869	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7845368	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv831285	chr8:35485874-35648117	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35486600-35494000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:35486800-35494200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:35489600-35494200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:35490000-35494000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:35490000-35494400	Enhancers	Fetal Heart	heart
6	chr8:35490600-35494400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:35492000-35499600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr8:35492600-35494000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:35492800-35495000	Enhancers	Colon Smooth Muscle	Colon
10	chr8:35493000-35495200	Enhancers	Rectal Smooth Muscle	rectum
11	chr8:35493200-35494200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:35493800-35494400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr8:35493800-35494400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr8:35493800-35494400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr8:35493800-35494400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:35493800-35494600	Enhancers	HUES48 Cell Line	embryonic stem cell

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