Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10092757	0.94[EUR][1000 genomes]
rs12114974	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16884195	0.94[EUR][1000 genomes]
rs1837347	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2018344	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28449348	0.94[EUR][1000 genomes]
rs28497090	0.94[EUR][1000 genomes]
rs28544500	0.94[EUR][1000 genomes]
rs28660087	0.94[EUR][1000 genomes]
rs28676752	0.94[EUR][1000 genomes]
rs28755800	0.94[EUR][1000 genomes]
rs55987331	0.94[EUR][1000 genomes]
rs56139060	0.94[EUR][1000 genomes]
rs56200409	0.94[EUR][1000 genomes]
rs57413160	0.84[ASN][1000 genomes]
rs58748125	0.94[EUR][1000 genomes]
rs59877348	0.84[ASN][1000 genomes]
rs66622867	0.94[EUR][1000 genomes]
rs68134897	0.94[EUR][1000 genomes]
rs6990664	0.94[EUR][1000 genomes]
rs7009470	0.88[EUR][1000 genomes]
rs7010859	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7016917	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7841869	0.94[EUR][1000 genomes]
rs7845368	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35419000-35439400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:35419000-35439600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:35423600-35432600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr8:35423800-35439400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr8:35423800-35439600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:35424200-35439400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:35424200-35439400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr8:35430800-35432000	Enhancers	Fetal Brain Male	brain
9	chr8:35431000-35431400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr8:35431000-35431600	Enhancers	Fetal Brain Female	brain
11	chr8:35431000-35431800	Enhancers	Brain Cingulate Gyrus	brain

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