Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10092757	1.00[EUR][1000 genomes]
rs12114974	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1837347	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2018344	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28449348	1.00[EUR][1000 genomes]
rs28497090	1.00[EUR][1000 genomes]
rs28544500	1.00[EUR][1000 genomes]
rs28660087	1.00[EUR][1000 genomes]
rs28676752	1.00[EUR][1000 genomes]
rs28755800	1.00[EUR][1000 genomes]
rs55987331	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56139060	1.00[EUR][1000 genomes]
rs56200409	1.00[EUR][1000 genomes]
rs57413160	0.81[ASN][1000 genomes]
rs58748125	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59877348	0.81[ASN][1000 genomes]
rs66622867	1.00[EUR][1000 genomes]
rs68134897	1.00[EUR][1000 genomes]
rs6983497	0.94[EUR][1000 genomes]
rs6990664	1.00[EUR][1000 genomes]
rs7009470	0.94[EUR][1000 genomes]
rs7010859	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7016917	0.94[EUR][1000 genomes]
rs7841869	1.00[EUR][1000 genomes]
rs7845368	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35464200-35474600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr8:35464200-35482400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:35466000-35480200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:35467400-35475800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:35469600-35473000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:35469600-35482000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr8:35469800-35473400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr8:35470000-35473400	Weak transcription	Fetal Heart	heart
9	chr8:35470000-35483000	Weak transcription	Fetal Intestine Small	intestine
10	chr8:35471000-35473600	Weak transcription	Fetal Intestine Large	intestine
11	chr8:35471400-35475000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr8:35471800-35474800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:35472000-35473600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr8:35472400-35473200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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