Variant report

Variant rs12115561
Chromosome Location chr9:538018-538019
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:530800-538400 Enhancers Breast Myoepithelial Primary Cells Breast
2 chr9:531400-546400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr9:532000-538600 Enhancers Fetal Muscle Leg muscle
4 chr9:532400-538400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
5 chr9:532800-538400 Enhancers Cortex derived primary cultured neurospheres brain
6 chr9:533400-540000 Weak transcription A549 lung
7 chr9:534800-546200 Weak transcription Fetal Kidney kidney
8 chr9:535400-538400 Weak transcription Stomach Mucosa stomach
9 chr9:535400-544600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
10 chr9:535400-546200 Weak transcription Esophagus oesophagus
11 chr9:535400-546600 Weak transcription Fetal Intestine Small intestine
12 chr9:535400-549200 Weak transcription Lung lung
13 chr9:535600-538600 Enhancers Fetal Heart heart
14 chr9:535600-539400 Weak transcription Fetal Intestine Large intestine
15 chr9:535600-546000 Weak transcription Duodenum Mucosa Duodenum
16 chr9:535600-546400 Weak transcription HUES64 Cell Line embryonic stem cell
17 chr9:535600-546600 Weak transcription HUES48 Cell Line embryonic stem cell
18 chr9:535800-544400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
19 chr9:535800-544600 Weak transcription Pancreas Pancrea
20 chr9:535800-546400 Weak transcription H1 Cell Line embryonic stem cell
21 chr9:535800-546600 Weak transcription iPS-20b Cell Line embryonic stem cell
22 chr9:536000-545400 Weak transcription Stomach Smooth Muscle stomach
23 chr9:536600-538200 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr9:536600-538400 Enhancers Brain Hippocampus Middle brain
25 chr9:536800-538200 Enhancers Fetal Thymus thymus
26 chr9:536800-538200 Enhancers Right Atrium heart
27 chr9:536800-538400 Enhancers Psoas Muscle Psoas
28 chr9:537000-538400 Enhancers Brain Cingulate Gyrus brain
29 chr9:537000-540000 Weak transcription Fetal Muscle Trunk muscle
30 chr9:537200-538200 Enhancers HSMMtube muscle
31 chr9:537200-538400 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
32 chr9:537200-538400 Enhancers Brain Angular Gyrus brain
33 chr9:537400-538200 Enhancers Primary T helper cells PMA-I stimulated --
34 chr9:537400-538200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr9:537400-539000 Weak transcription Aorta Aorta
36 chr9:537400-546000 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr9:537400-546400 Weak transcription Rectal Mucosa Donor 29 rectum
38 chr9:537600-538200 Enhancers Brain Inferior Temporal Lobe brain
39 chr9:537600-538200 Weak transcription Brain Substantia Nigra brain
40 chr9:537800-539600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr9:537800-544600 Weak transcription Left Ventricle heart
42 chr9:537800-545600 Weak transcription NHEK skin
43 chr9:537800-546400 Weak transcription Rectal Mucosa Donor 31 rectum
44 chr9:538000-543600 Weak transcription Brain Anterior Caudate brain
45 chr9:538000-546000 Weak transcription HMEC breast

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