The 2.0 version of rSNPBase

Variant report

Variant rs1211642
Chromosome Location chr15:42890450-42890451
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:64 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:42874200-42894400 Weak transcription A549 lung
2 chr15:42874200-42896600 Weak transcription Hela-S3 cervix
3 chr15:42874400-42895800 Weak transcription Thymus Thymus
4 chr15:42874400-42900200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr15:42874400-42900200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
6 chr15:42874400-42900200 Weak transcription Lung lung
7 chr15:42874600-42896200 Weak transcription Primary T cells from cord blood blood
8 chr15:42874800-42929800 Weak transcription Fetal Brain Female brain
9 chr15:42876800-42900200 Weak transcription HMEC breast
10 chr15:42877000-42896000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr15:42877000-42897000 Weak transcription Right Ventricle heart
12 chr15:42877000-42900200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr15:42877200-42911200 Weak transcription Cortex derived primary cultured neurospheres brain
14 chr15:42878400-42894200 Weak transcription GM12878-XiMat blood
15 chr15:42878800-42894200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
16 chr15:42879000-42892000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr15:42879800-42898200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr15:42880800-42896800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
19 chr15:42881000-42896800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
20 chr15:42882800-42891600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr15:42883200-42897000 Weak transcription Left Ventricle heart
22 chr15:42883200-42897200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr15:42883800-42896200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr15:42884000-42891800 Weak transcription HUES64 Cell Line embryonic stem cell
25 chr15:42884200-42897200 Weak transcription Muscle Satellite Cultured Cells --
26 chr15:42884400-42894400 Weak transcription HepG2 liver
27 chr15:42885000-42890600 Enhancers Fetal Stomach stomach
28 chr15:42886600-42897600 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr15:42887600-42892400 Weak transcription Primary B cells from cord blood blood
30 chr15:42887600-42897800 Weak transcription Breast Myoepithelial Primary Cells Breast
31 chr15:42887800-42894200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
32 chr15:42888000-42892200 Weak transcription Brain Germinal Matrix brain
33 chr15:42888000-42897000 Weak transcription Psoas Muscle Psoas
34 chr15:42888000-42897400 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr15:42888400-42891400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
36 chr15:42888400-42897000 Weak transcription Placenta Placenta
37 chr15:42888400-42897400 Weak transcription Aorta Aorta
38 chr15:42888600-42891200 Weak transcription Primary hematopoietic stem cells short term culture blood
39 chr15:42888600-42897000 Weak transcription Fetal Adrenal Gland Adrenal Gland
40 chr15:42888600-42897200 Weak transcription NHDF-Ad bronchial
41 chr15:42888600-42897800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
42 chr15:42888600-42901200 Weak transcription Fetal Brain Male brain
43 chr15:42888800-42894200 Weak transcription K562 blood
44 chr15:42888800-42897200 Weak transcription HSMM muscle
45 chr15:42888800-42901000 Weak transcription Brain Angular Gyrus brain
46 chr15:42888800-42909600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr15:42888800-42911000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
48 chr15:42889000-42891600 Weak transcription Fetal Heart heart
49 chr15:42889000-42895200 Weak transcription Primary hematopoietic stem cells blood
50 chr15:42889000-42897000 Weak transcription Brain Hippocampus Middle brain

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Last update: Aug 31, 2015