Variant report

Variant	rs876992
Chromosome Location	chr15:42878456-42878457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42873048..42876397-chr15:42877350..42880260,3	K562	blood:
2	chr15:42870994..42874548-chr15:42877350..42881148,3	K562	blood:
3	chr15:42877467..42879240-chr15:42881320..42882829,2	K562	blood:
4	chr15:42867158..42870552-chr15:42876715..42882343,6	K562	blood:

Variant related genes	Relation type
ENSG00000260282	Chromatin interaction
ENSG00000159433	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11070374	0.88[CHB][hapmap]
rs11070376	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11631193	0.88[ASN][1000 genomes]
rs11632169	0.82[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.81[LWK][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1197545	0.90[AMR][1000 genomes]
rs1197546	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1197547	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs1211642	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12903416	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12904010	0.95[EUR][1000 genomes]
rs1667493	0.94[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1705360	0.88[ASW][hapmap];0.83[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1814518	0.83[CEU][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2241998	0.88[CHB][hapmap];0.87[CHD][hapmap];0.84[ASN][1000 genomes]
rs4447398	0.93[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4923949	0.86[ASN][1000 genomes]
rs565298	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6493053	0.81[ASN][1000 genomes]
rs6493054	0.88[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7168835	0.88[CHB][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42869000-42887400	Weak transcription	Small Intestine	intestine
2	chr15:42874000-42883000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:42874200-42879400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:42874200-42880800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:42874200-42883400	Weak transcription	NHEK	skin
6	chr15:42874200-42883600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:42874200-42885800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:42874200-42894400	Weak transcription	A549	lung
9	chr15:42874200-42896600	Weak transcription	Hela-S3	cervix
10	chr15:42874400-42880000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:42874400-42883400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr15:42874400-42884800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:42874400-42886400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr15:42874400-42887000	Weak transcription	Primary B cells from peripheral blood	blood
15	chr15:42874400-42887000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr15:42874400-42887200	Weak transcription	Placenta	Placenta
17	chr15:42874400-42887800	Weak transcription	HSMMtube	muscle
18	chr15:42874400-42895800	Weak transcription	Thymus	Thymus
19	chr15:42874400-42900200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:42874400-42900200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:42874400-42900200	Weak transcription	Lung	lung
22	chr15:42874600-42880400	Weak transcription	Fetal Intestine Large	intestine
23	chr15:42874600-42881600	Weak transcription	Primary B cells from cord blood	blood
24	chr15:42874600-42888200	Weak transcription	Colonic Mucosa	Colon
25	chr15:42874600-42896200	Weak transcription	Primary T cells from cord blood	blood
26	chr15:42874800-42929800	Weak transcription	Fetal Brain Female	brain
27	chr15:42875400-42883000	Weak transcription	Ovary	ovary
28	chr15:42876000-42888400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr15:42876800-42879800	Weak transcription	Osteobl	bone
30	chr15:42876800-42883800	Weak transcription	Fetal Intestine Small	intestine
31	chr15:42876800-42885200	Weak transcription	NHLF	lung
32	chr15:42876800-42887200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr15:42876800-42887400	Weak transcription	Aorta	Aorta
34	chr15:42876800-42900200	Weak transcription	HMEC	breast
35	chr15:42877000-42879400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:42877000-42879600	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr15:42877000-42879600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr15:42877000-42881000	Strong transcription	Fetal Muscle Leg	muscle
39	chr15:42877000-42881200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr15:42877000-42882400	Weak transcription	HepG2	liver
41	chr15:42877000-42883000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr15:42877000-42883000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr15:42877000-42883600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr15:42877000-42883600	Weak transcription	Fetal Lung	lung
45	chr15:42877000-42885000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr15:42877000-42885000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr15:42877000-42886800	Weak transcription	Right Atrium	heart
48	chr15:42877000-42887000	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr15:42877000-42887400	Weak transcription	Fetal Kidney	kidney
50	chr15:42877000-42887400	Weak transcription	NH-A	brain

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