Variant report

Variant	rs11070376
Chromosome Location	chr15:42879757-42879758
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42873048..42876397-chr15:42877350..42880260,3	K562	blood:
2	chr15:42870994..42874548-chr15:42877350..42881148,3	K562	blood:
3	chr15:42867158..42870086-chr15:42878537..42881066,3	K562	blood:
4	chr15:42867158..42870552-chr15:42876715..42882343,6	K562	blood:

Variant related genes	Relation type
ENSG00000159433	Chromatin interaction
ENSG00000260282	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10518766	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1060291	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1060293	1.00[ASN][1000 genomes]
rs10851410	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11022	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11636577	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12324717	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12904010	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16973320	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1705360	0.83[CEU][hapmap]
rs17709180	1.00[ASN][1000 genomes]
rs17709377	1.00[ASN][1000 genomes]
rs17766532	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1814518	0.81[EUR][1000 genomes]
rs1900921	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2899051	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2899059	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes]
rs34359922	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34643746	1.00[ASN][1000 genomes]
rs34792942	1.00[ASN][1000 genomes]
rs3986280	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4923948	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4924684	1.00[ASN][1000 genomes]
rs4924687	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs56357092	1.00[ASN][1000 genomes]
rs56982416	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58042601	1.00[ASN][1000 genomes]
rs58641431	1.00[ASN][1000 genomes]
rs59697584	1.00[ASN][1000 genomes]
rs59705032	1.00[ASN][1000 genomes]
rs60380503	1.00[ASN][1000 genomes]
rs60584955	1.00[ASN][1000 genomes]
rs60812675	1.00[ASN][1000 genomes]
rs61489160	1.00[ASN][1000 genomes]
rs62022317	1.00[ASN][1000 genomes]
rs6493054	0.83[CEU][hapmap]
rs7180483	1.00[ASN][1000 genomes]
rs73402783	1.00[ASN][1000 genomes]
rs73402785	1.00[ASN][1000 genomes]
rs73404714	1.00[ASN][1000 genomes]
rs73404717	0.90[AMR][1000 genomes]
rs73404723	1.00[ASN][1000 genomes]
rs73404730	1.00[ASN][1000 genomes]
rs73404763	1.00[ASN][1000 genomes]
rs73406518	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73406534	1.00[ASN][1000 genomes]
rs73406545	1.00[ASN][1000 genomes]
rs74009095	1.00[ASN][1000 genomes]
rs8033412	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs876992	1.00[CEU][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42869000-42887400	Weak transcription	Small Intestine	intestine
2	chr15:42874000-42883000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:42874200-42880800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:42874200-42883400	Weak transcription	NHEK	skin
5	chr15:42874200-42883600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr15:42874200-42885800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:42874200-42894400	Weak transcription	A549	lung
8	chr15:42874200-42896600	Weak transcription	Hela-S3	cervix
9	chr15:42874400-42880000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:42874400-42883400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr15:42874400-42884800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:42874400-42886400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:42874400-42887000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr15:42874400-42887000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr15:42874400-42887200	Weak transcription	Placenta	Placenta
16	chr15:42874400-42887800	Weak transcription	HSMMtube	muscle
17	chr15:42874400-42895800	Weak transcription	Thymus	Thymus
18	chr15:42874400-42900200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:42874400-42900200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr15:42874400-42900200	Weak transcription	Lung	lung
21	chr15:42874600-42880400	Weak transcription	Fetal Intestine Large	intestine
22	chr15:42874600-42881600	Weak transcription	Primary B cells from cord blood	blood
23	chr15:42874600-42888200	Weak transcription	Colonic Mucosa	Colon
24	chr15:42874600-42896200	Weak transcription	Primary T cells from cord blood	blood
25	chr15:42874800-42929800	Weak transcription	Fetal Brain Female	brain
26	chr15:42875400-42883000	Weak transcription	Ovary	ovary
27	chr15:42876000-42888400	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr15:42876800-42879800	Weak transcription	Osteobl	bone
29	chr15:42876800-42883800	Weak transcription	Fetal Intestine Small	intestine
30	chr15:42876800-42885200	Weak transcription	NHLF	lung
31	chr15:42876800-42887200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:42876800-42887400	Weak transcription	Aorta	Aorta
33	chr15:42876800-42900200	Weak transcription	HMEC	breast
34	chr15:42877000-42881000	Strong transcription	Fetal Muscle Leg	muscle
35	chr15:42877000-42881200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr15:42877000-42882400	Weak transcription	HepG2	liver
37	chr15:42877000-42883000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:42877000-42883000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr15:42877000-42883600	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr15:42877000-42883600	Weak transcription	Fetal Lung	lung
41	chr15:42877000-42885000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr15:42877000-42885000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr15:42877000-42886800	Weak transcription	Right Atrium	heart
44	chr15:42877000-42887000	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr15:42877000-42887400	Weak transcription	Fetal Kidney	kidney
46	chr15:42877000-42887400	Weak transcription	NH-A	brain
47	chr15:42877000-42888200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr15:42877000-42890200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr15:42877000-42896000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr15:42877000-42897000	Weak transcription	Right Ventricle	heart

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