Variant report

Variant	rs56982416
Chromosome Location	chr15:42818591-42818592
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42817015..42818748-chr15:42821725..42824500,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10518766	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1060291	1.00[ASN][1000 genomes]
rs1060293	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11022	1.00[ASN][1000 genomes]
rs11070376	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11636577	1.00[ASN][1000 genomes]
rs12904010	0.90[AMR][1000 genomes]
rs16973320	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17709180	1.00[ASN][1000 genomes]
rs17709377	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17766532	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1900921	1.00[ASN][1000 genomes]
rs2899051	1.00[ASN][1000 genomes]
rs2899059	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34359922	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34643746	1.00[ASN][1000 genomes]
rs34792942	1.00[ASN][1000 genomes]
rs3986280	1.00[ASN][1000 genomes]
rs4923948	1.00[ASN][1000 genomes]
rs4924684	1.00[ASN][1000 genomes]
rs4924687	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56357092	1.00[ASN][1000 genomes]
rs58042601	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58641431	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59697584	1.00[ASN][1000 genomes]
rs59705032	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60380503	1.00[ASN][1000 genomes]
rs60584955	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60812675	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60911842	0.90[AFR][1000 genomes]
rs61489160	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022317	1.00[ASN][1000 genomes]
rs7180483	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73402783	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73402785	1.00[ASN][1000 genomes]
rs73404714	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73404717	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73404723	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73404730	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73404763	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73406518	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73406534	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73406545	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74009095	1.00[ASN][1000 genomes]
rs8033412	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	esv3334708	chr15:42664344-42827738	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	esv2761870	chr15:42815733-42821267	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42790800-42821400	Weak transcription	Right Ventricle	heart
2	chr15:42793000-42835600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:42793800-42837200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr15:42797400-42839800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:42797600-42822200	Weak transcription	Small Intestine	intestine
6	chr15:42797600-42839400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:42799200-42839400	Weak transcription	Stomach Mucosa	stomach
8	chr15:42802400-42839200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:42803200-42837200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:42803600-42839400	Weak transcription	A549	lung
11	chr15:42804000-42826800	Strong transcription	HUVEC	blood vessel
12	chr15:42804600-42836400	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr15:42804800-42825400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:42804800-42828800	Strong transcription	Placenta	Placenta
15	chr15:42804800-42836400	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr15:42804800-42836400	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr15:42805000-42818800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:42805000-42818800	Strong transcription	NH-A	brain
19	chr15:42805200-42825800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr15:42805400-42836800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr15:42805600-42818800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:42806200-42836400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr15:42806200-42839000	Weak transcription	Fetal Brain Male	brain
24	chr15:42807600-42821800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr15:42808200-42820400	Weak transcription	Brain Angular Gyrus	brain
26	chr15:42808200-42824800	Weak transcription	Hela-S3	cervix
27	chr15:42808400-42820000	Weak transcription	K562	blood
28	chr15:42808400-42821400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr15:42808400-42822000	Weak transcription	HMEC	breast
30	chr15:42808400-42839000	Weak transcription	Fetal Heart	heart
31	chr15:42808800-42821000	Weak transcription	Aorta	Aorta
32	chr15:42808800-42836000	Weak transcription	Esophagus	oesophagus
33	chr15:42810200-42831000	Weak transcription	Gastric	stomach
34	chr15:42810200-42840200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:42810400-42820400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr15:42810400-42821400	Weak transcription	Psoas Muscle	Psoas
37	chr15:42810400-42821800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr15:42810600-42821400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr15:42810600-42822000	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr15:42810600-42822400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr15:42810800-42823400	Weak transcription	Ovary	ovary
42	chr15:42811000-42821400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr15:42811000-42821800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr15:42811000-42837600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr15:42811200-42822000	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr15:42811200-42828600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr15:42811200-42831200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr15:42811400-42821400	Weak transcription	Fetal Lung	lung
49	chr15:42811800-42819000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr15:42811800-42836000	Weak transcription	Colonic Mucosa	Colon

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