Variant report

Variant	rs17766532
Chromosome Location	chr15:42813312-42813313
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42808288..42811039-chr15:42812742..42814723,2	K562	blood:
2	chr15:42812167..42816411-chr15:42819043..42822094,4	K562	blood:
3	chr15:42802805..42805415-chr15:42810505..42813373,2	K562	blood:
4	chr15:42803044..42805415-chr15:42811616..42813373,2	K562	blood:

Variant related genes	Relation type
ENSG00000092531	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10518763	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10518766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1060291	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1060293	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10851410	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11022	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11070376	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11636577	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12324717	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12904010	0.86[AMR][1000 genomes]
rs1659215	0.82[CEU][hapmap]
rs16973053	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16973054	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16973059	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16973089	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16973091	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16973093	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16973095	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16973096	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16973097	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16973107	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16973109	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16973132	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs16973137	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs16973148	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16973153	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16973155	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs16973171	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16973174	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16973175	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16973320	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17709180	1.00[ASN][1000 genomes]
rs17709377	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1900921	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2412704	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2412709	0.82[CEU][hapmap]
rs28364347	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2899051	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2899059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34359922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34643746	1.00[ASN][1000 genomes]
rs34792942	1.00[ASN][1000 genomes]
rs3986280	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4344713	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4923948	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4924684	1.00[ASN][1000 genomes]
rs4924687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56357092	1.00[ASN][1000 genomes]
rs56982416	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58042601	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58641431	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59697584	1.00[ASN][1000 genomes]
rs59705032	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60380503	1.00[ASN][1000 genomes]
rs60584955	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60812675	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61489160	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61753567	1.00[AFR][1000 genomes]
rs62022317	1.00[ASN][1000 genomes]
rs7164437	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7164874	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7165023	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7178901	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7180483	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7182797	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73402783	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73402785	1.00[ASN][1000 genomes]
rs73404714	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73404717	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73404723	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73404730	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73404763	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73406518	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73406534	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73406545	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74009095	1.00[ASN][1000 genomes]
rs8033412	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8038153	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	esv3334708	chr15:42664344-42827738	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42790800-42821400	Weak transcription	Right Ventricle	heart
2	chr15:42793000-42835600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:42793800-42837200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr15:42797400-42839800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:42797600-42822200	Weak transcription	Small Intestine	intestine
6	chr15:42797600-42839400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:42799200-42839400	Weak transcription	Stomach Mucosa	stomach
8	chr15:42802400-42839200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:42802600-42817400	Strong transcription	Primary B cells from peripheral blood	blood
10	chr15:42802800-42817200	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr15:42803200-42837200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:42803600-42839400	Weak transcription	A549	lung
13	chr15:42803800-42817600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:42804000-42826800	Strong transcription	HUVEC	blood vessel
15	chr15:42804400-42814400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr15:42804600-42836400	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr15:42804800-42814600	Strong transcription	Primary T cells from cord blood	blood
18	chr15:42804800-42817200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:42804800-42817400	Strong transcription	Adipose Nuclei	Adipose
20	chr15:42804800-42818000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:42804800-42818000	Strong transcription	Fetal Intestine Large	intestine
22	chr15:42804800-42825400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:42804800-42828800	Strong transcription	Placenta	Placenta
24	chr15:42804800-42836400	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr15:42804800-42836400	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr15:42805000-42814400	Strong transcription	Fetal Thymus	thymus
27	chr15:42805000-42814600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr15:42805000-42818400	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr15:42805000-42818800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr15:42805000-42818800	Strong transcription	NH-A	brain
31	chr15:42805200-42814200	Strong transcription	Duodenum Mucosa	Duodenum
32	chr15:42805200-42817000	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr15:42805200-42817600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:42805200-42825800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr15:42805400-42813600	Strong transcription	Fetal Muscle Leg	muscle
36	chr15:42805400-42814600	Strong transcription	Liver	Liver
37	chr15:42805400-42816600	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr15:42805400-42816600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr15:42805400-42836800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr15:42805600-42814400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr15:42805600-42818400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:42805600-42818800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:42805800-42814000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr15:42806200-42836400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr15:42806200-42839000	Weak transcription	Fetal Brain Male	brain
46	chr15:42807200-42816600	Weak transcription	Pancreas	Pancrea
47	chr15:42807600-42821800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr15:42808200-42820400	Weak transcription	Brain Angular Gyrus	brain
49	chr15:42808200-42824800	Weak transcription	Hela-S3	cervix
50	chr15:42808400-42820000	Weak transcription	K562	blood

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