Variant report

Variant	rs34792942
Chromosome Location	chr15:42742435-42742436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42741487..42743250-chr15:42819524..42821185,2	K562	blood:

Variant related genes	Relation type
ENSG00000092531	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10518766	1.00[ASN][1000 genomes]
rs1060291	1.00[ASN][1000 genomes]
rs1060293	1.00[ASN][1000 genomes]
rs11022	1.00[ASN][1000 genomes]
rs11070376	1.00[ASN][1000 genomes]
rs11636577	1.00[ASN][1000 genomes]
rs12594633	0.82[EUR][1000 genomes]
rs1659215	0.82[EUR][1000 genomes]
rs16973320	1.00[ASN][1000 genomes]
rs17695121	0.85[AMR][1000 genomes]
rs17709180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17709377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17766532	1.00[ASN][1000 genomes]
rs1900921	1.00[ASN][1000 genomes]
rs28364348	0.83[EUR][1000 genomes]
rs2899051	1.00[ASN][1000 genomes]
rs34359922	1.00[ASN][1000 genomes]
rs34643746	1.00[ASN][1000 genomes]
rs3986280	1.00[ASN][1000 genomes]
rs4923948	1.00[ASN][1000 genomes]
rs4924676	0.85[EUR][1000 genomes]
rs4924684	1.00[ASN][1000 genomes]
rs4924687	1.00[ASN][1000 genomes]
rs56357092	1.00[ASN][1000 genomes]
rs56982416	1.00[ASN][1000 genomes]
rs57134130	0.81[EUR][1000 genomes]
rs58042601	1.00[ASN][1000 genomes]
rs58641431	1.00[ASN][1000 genomes]
rs59697584	1.00[ASN][1000 genomes]
rs59705032	1.00[ASN][1000 genomes]
rs60380503	1.00[ASN][1000 genomes]
rs60584955	1.00[ASN][1000 genomes]
rs60812675	1.00[ASN][1000 genomes]
rs61489160	1.00[ASN][1000 genomes]
rs61753567	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62022317	1.00[ASN][1000 genomes]
rs7180483	1.00[ASN][1000 genomes]
rs73402783	1.00[ASN][1000 genomes]
rs73402785	1.00[ASN][1000 genomes]
rs73404714	1.00[ASN][1000 genomes]
rs73404723	1.00[ASN][1000 genomes]
rs73404730	1.00[ASN][1000 genomes]
rs73404763	1.00[ASN][1000 genomes]
rs73406518	1.00[ASN][1000 genomes]
rs73406534	1.00[ASN][1000 genomes]
rs73406545	1.00[ASN][1000 genomes]
rs74009095	1.00[ASN][1000 genomes]
rs8033412	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv832986	chr15:42587825-42753664	Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv832987	chr15:42627447-42792348	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	esv3334708	chr15:42664344-42827738	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34792942	LRRC57	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42694600-42750600	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr15:42700800-42747200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr15:42701200-42766600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr15:42701600-42744200	Strong transcription	Stomach Smooth Muscle	stomach
5	chr15:42702200-42750200	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr15:42702400-42744200	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr15:42702400-42744200	Strong transcription	Liver	Liver
8	chr15:42702600-42744400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr15:42702800-42744400	Strong transcription	Duodenum Mucosa	Duodenum
10	chr15:42704000-42744400	Strong transcription	Fetal Lung	lung
11	chr15:42704000-42746800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:42704600-42744200	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr15:42705800-42749200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr15:42706400-42744200	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr15:42709800-42747000	Weak transcription	Stomach Mucosa	stomach
16	chr15:42711800-42749200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr15:42720400-42759200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr15:42721000-42744400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:42721800-42747400	Strong transcription	HSMM	muscle
20	chr15:42724400-42744200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr15:42727400-42745600	Strong transcription	GM12878-XiMat	blood
22	chr15:42730800-42746800	Strong transcription	Hela-S3	cervix
23	chr15:42732400-42746200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr15:42732600-42746200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:42732800-42744200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:42733000-42745200	Strong transcription	Fetal Stomach	stomach
27	chr15:42733200-42744200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr15:42733200-42744200	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr15:42733200-42744200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr15:42733200-42744600	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr15:42733200-42747400	Strong transcription	Placenta	Placenta
32	chr15:42733400-42744200	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr15:42733400-42744400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr15:42733400-42744400	Strong transcription	Fetal Thymus	thymus
35	chr15:42733400-42744400	Strong transcription	NHDF-Ad	bronchial
36	chr15:42733400-42747000	Strong transcription	Primary B cells from peripheral blood	blood
37	chr15:42733400-42747200	Strong transcription	Primary B cells from cord blood	blood
38	chr15:42733400-42748000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:42733600-42744200	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr15:42733600-42744200	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr15:42733600-42744200	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr15:42733600-42744800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr15:42734000-42744200	Strong transcription	Thymus	Thymus
44	chr15:42734000-42744400	Strong transcription	Primary T cells from cord blood	blood
45	chr15:42734200-42744000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr15:42734200-42744200	Strong transcription	Fetal Brain Female	brain
47	chr15:42734200-42744400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr15:42736200-42744800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr15:42736600-42743200	Strong transcription	Primary hematopoietic stem cells	blood
50	chr15:42736600-42744200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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