Variant report

Variant	rs565298
Chromosome Location	chr15:42893192-42893193
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42890368..42894059-chr15:42896561..42900467,4	K562	blood:
2	chr15:42891809..42893588-chr15:42902452..42903976,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11632169	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1197545	0.90[AMR][1000 genomes]
rs1197546	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1197547	0.88[ASN][1000 genomes]
rs1211642	0.99[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12903416	0.83[ASN][1000 genomes]
rs1667493	0.89[ASN][1000 genomes]
rs1705360	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1814518	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4447398	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4923949	0.84[ASN][1000 genomes]
rs6493054	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7168835	0.80[ASN][1000 genomes]
rs876992	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42874200-42894400	Weak transcription	A549	lung
2	chr15:42874200-42896600	Weak transcription	Hela-S3	cervix
3	chr15:42874400-42895800	Weak transcription	Thymus	Thymus
4	chr15:42874400-42900200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:42874400-42900200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr15:42874400-42900200	Weak transcription	Lung	lung
7	chr15:42874600-42896200	Weak transcription	Primary T cells from cord blood	blood
8	chr15:42874800-42929800	Weak transcription	Fetal Brain Female	brain
9	chr15:42876800-42900200	Weak transcription	HMEC	breast
10	chr15:42877000-42896000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:42877000-42897000	Weak transcription	Right Ventricle	heart
12	chr15:42877000-42900200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:42877200-42911200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr15:42878400-42894200	Weak transcription	GM12878-XiMat	blood
15	chr15:42878800-42894200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:42879800-42898200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:42880800-42896800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:42881000-42896800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:42883200-42897000	Weak transcription	Left Ventricle	heart
20	chr15:42883200-42897200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:42883800-42896200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:42884200-42897200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr15:42884400-42894400	Weak transcription	HepG2	liver
24	chr15:42886600-42897600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr15:42887600-42897800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:42887800-42894200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:42888000-42897000	Weak transcription	Psoas Muscle	Psoas
28	chr15:42888000-42897400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr15:42888400-42897000	Weak transcription	Placenta	Placenta
30	chr15:42888400-42897400	Weak transcription	Aorta	Aorta
31	chr15:42888600-42897000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr15:42888600-42897200	Weak transcription	NHDF-Ad	bronchial
33	chr15:42888600-42897800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr15:42888600-42901200	Weak transcription	Fetal Brain Male	brain
35	chr15:42888800-42894200	Weak transcription	K562	blood
36	chr15:42888800-42897200	Weak transcription	HSMM	muscle
37	chr15:42888800-42901000	Weak transcription	Brain Angular Gyrus	brain
38	chr15:42888800-42909600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr15:42888800-42911000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr15:42889000-42895200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr15:42889000-42897000	Weak transcription	Brain Hippocampus Middle	brain
42	chr15:42889000-42897200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:42889000-42897200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr15:42889000-42897200	Weak transcription	HSMMtube	muscle
45	chr15:42889400-42894200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr15:42889400-42896200	Weak transcription	Rectal Smooth Muscle	rectum
47	chr15:42889600-42894600	Weak transcription	Stomach Smooth Muscle	stomach
48	chr15:42889600-42897200	Weak transcription	Fetal Lung	lung
49	chr15:42889600-42897600	Weak transcription	Fetal Kidney	kidney
50	chr15:42889600-42903600	Weak transcription	Ovary	ovary

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