Variant report

Variant	rs1211649
Chromosome Location	chr6:64225411-64225412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1201698	0.88[AMR][1000 genomes]
rs1779776	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1779781	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv970333	chr6:64215926-64234330	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64220200-64229200	Weak transcription	NHEK	skin
2	chr6:64220600-64227600	Weak transcription	GM12878-XiMat	blood
3	chr6:64221000-64226200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:64221200-64226200	Weak transcription	Stomach Mucosa	stomach
5	chr6:64224000-64226200	Enhancers	Hela-S3	cervix
6	chr6:64224200-64226000	Flanking Active TSS	HepG2	liver
7	chr6:64224200-64230400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:64224400-64226000	Weak transcription	Fetal Intestine Large	intestine
9	chr6:64224400-64226000	Weak transcription	Fetal Intestine Small	intestine
10	chr6:64225000-64226200	Enhancers	Liver	Liver
11	chr6:64225000-64226200	Enhancers	A549	lung
12	chr6:64225000-64235200	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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