Variant report

Variant	rs1779776
Chromosome Location	chr6:64221121-64221122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1198039	1.00[AFR][1000 genomes]
rs1201698	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1211649	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1779781	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv970333	chr6:64215926-64234330	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64219000-64221600	Enhancers	Fetal Intestine Large	intestine
2	chr6:64219600-64221200	Enhancers	Duodenum Mucosa	Duodenum
3	chr6:64219600-64221200	Enhancers	Fetal Intestine Small	intestine
4	chr6:64219600-64221200	Enhancers	Stomach Mucosa	stomach
5	chr6:64220000-64224200	Enhancers	HepG2	liver
6	chr6:64220200-64222600	Weak transcription	Fetal Lung	lung
7	chr6:64220200-64224000	Enhancers	A549	lung
8	chr6:64220200-64229200	Weak transcription	NHEK	skin
9	chr6:64220400-64224000	Weak transcription	Hela-S3	cervix
10	chr6:64220400-64224800	Enhancers	Liver	Liver
11	chr6:64220600-64227600	Weak transcription	GM12878-XiMat	blood
12	chr6:64221000-64224200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:64221000-64224600	Weak transcription	Pancreas	Pancrea
14	chr6:64221000-64226200	Weak transcription	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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