Variant report

Variant	rs12122982
Chromosome Location	chr1:56842509-56842510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10493205	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10493206	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10493207	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10493208	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11206797	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12120414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12135065	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12562368	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12732326	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12732886	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12733519	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12734077	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1931076	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4244023	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4244024	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4344366	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4408191	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4600084	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4912229	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61772749	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67708636	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56839000-56845000	Enhancers	Fetal Muscle Leg	muscle
2	chr1:56839200-56842800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:56839200-56846800	Enhancers	Fetal Stomach	stomach
4	chr1:56839400-56842600	Enhancers	NHDF-Ad	bronchial
5	chr1:56839400-56842800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr1:56839400-56843000	Enhancers	Adipose Nuclei	Adipose
7	chr1:56839400-56844600	Enhancers	Fetal Lung	lung
8	chr1:56839400-56844800	Enhancers	Rectal Smooth Muscle	rectum
9	chr1:56839600-56842600	Enhancers	HSMM	muscle
10	chr1:56839600-56842600	Enhancers	HSMMtube	muscle
11	chr1:56839600-56842800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:56839600-56843800	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr1:56839600-56844200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr1:56839600-56844800	Enhancers	Colon Smooth Muscle	Colon
15	chr1:56839800-56842600	Enhancers	NH-A	brain
16	chr1:56839800-56843800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr1:56839800-56844600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr1:56840000-56843400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:56840000-56843800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr1:56840000-56844800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr1:56840000-56862400	Weak transcription	Gastric	stomach
22	chr1:56840200-56842800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:56840200-56843400	Weak transcription	Colonic Mucosa	Colon
24	chr1:56840200-56843600	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr1:56840200-56843600	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr1:56840200-56844400	Enhancers	Fetal Heart	heart
27	chr1:56840200-56845000	Enhancers	Brain Germinal Matrix	brain
28	chr1:56840400-56842600	Enhancers	Osteobl	bone
29	chr1:56840400-56843200	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr1:56840400-56843800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:56840400-56843800	Weak transcription	Brain Anterior Caudate	brain
32	chr1:56840600-56842600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr1:56840800-56842600	Weak transcription	Brain Hippocampus Middle	brain
34	chr1:56840800-56843600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr1:56840800-56844400	Weak transcription	HepG2	liver
36	chr1:56841800-56842600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr1:56841800-56842600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:56841800-56842800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr1:56841800-56842800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr1:56841800-56843600	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr1:56842000-56842600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr1:56842000-56842600	Enhancers	Brain Cingulate Gyrus	brain
43	chr1:56842000-56842600	Enhancers	Fetal Thymus	thymus
44	chr1:56842000-56842600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr1:56842000-56842800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr1:56842000-56842800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr1:56842000-56842800	Enhancers	Psoas Muscle	Psoas
48	chr1:56842000-56842800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
49	chr1:56842000-56842800	Enhancers	Dnd41	blood
50	chr1:56842000-56842800	Enhancers	NHEK	skin

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