Variant report

Variant	rs12135065
Chromosome Location	chr1:56836901-56836902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10493205	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10493206	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10493207	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10493208	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11206797	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12120414	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12122982	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12562368	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12732326	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12732886	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12733519	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12734077	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1931076	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4244023	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4244024	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4344366	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4408191	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4600084	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4912229	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61772749	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67708636	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932	chr1:56816732-56842261	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv508204	chr1:56830844-56840857	Flanking Active TSS Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
3	esv1005520	chr1:56831042-56839645	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56825400-56839000	Weak transcription	Psoas Muscle	Psoas
2	chr1:56835600-56837000	Enhancers	H9 Cell Line	embryonic stem cell
3	chr1:56835600-56837200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:56835800-56837000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:56835800-56837200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr1:56835800-56837200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:56835800-56837200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:56836000-56837000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr1:56836000-56837200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:56836200-56839800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:56836400-56837000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:56836400-56838400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr1:56836600-56837000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr1:56836600-56837000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr1:56836600-56837000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr1:56836600-56837200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr1:56836600-56837200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr1:56836800-56837000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr1:56836800-56837000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr1:56836800-56840600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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