Variant report

Variant	rs12732326
Chromosome Location	chr1:56841029-56841030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10493205	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10493206	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10493207	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10493208	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11206797	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12120414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12122982	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12135065	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12562368	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12732886	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12733519	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12734077	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1931076	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4244023	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4244024	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4344366	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4408191	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4600084	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4912229	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61772749	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67708636	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932	chr1:56816732-56842261	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56837200-56842200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:56837200-56842400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:56839000-56845000	Enhancers	Fetal Muscle Leg	muscle
4	chr1:56839200-56842800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:56839200-56846800	Enhancers	Fetal Stomach	stomach
6	chr1:56839400-56841200	Enhancers	Fetal Intestine Small	intestine
7	chr1:56839400-56842600	Enhancers	NHDF-Ad	bronchial
8	chr1:56839400-56842800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:56839400-56843000	Enhancers	Adipose Nuclei	Adipose
10	chr1:56839400-56844600	Enhancers	Fetal Lung	lung
11	chr1:56839400-56844800	Enhancers	Rectal Smooth Muscle	rectum
12	chr1:56839600-56842600	Enhancers	HSMM	muscle
13	chr1:56839600-56842600	Enhancers	HSMMtube	muscle
14	chr1:56839600-56842800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:56839600-56843800	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr1:56839600-56844200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr1:56839600-56844800	Enhancers	Colon Smooth Muscle	Colon
18	chr1:56839800-56841200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:56839800-56841200	Enhancers	Fetal Intestine Large	intestine
20	chr1:56839800-56841200	Enhancers	Right Ventricle	heart
21	chr1:56839800-56841400	Enhancers	Aorta	Aorta
22	chr1:56839800-56841600	Enhancers	Left Ventricle	heart
23	chr1:56839800-56842600	Enhancers	NH-A	brain
24	chr1:56839800-56843800	Enhancers	H1 Cell Line	embryonic stem cell
25	chr1:56839800-56844600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr1:56840000-56842200	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr1:56840000-56842200	Enhancers	Stomach Smooth Muscle	stomach
28	chr1:56840000-56843400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr1:56840000-56843800	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr1:56840000-56844800	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr1:56840000-56862400	Weak transcription	Gastric	stomach
32	chr1:56840200-56841600	Enhancers	Fetal Thymus	thymus
33	chr1:56840200-56842000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr1:56840200-56842200	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr1:56840200-56842400	Weak transcription	Lung	lung
36	chr1:56840200-56842400	Enhancers	A549	lung
37	chr1:56840200-56842800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr1:56840200-56843400	Weak transcription	Colonic Mucosa	Colon
39	chr1:56840200-56843600	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr1:56840200-56843600	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr1:56840200-56844400	Enhancers	Fetal Heart	heart
42	chr1:56840200-56845000	Enhancers	Brain Germinal Matrix	brain
43	chr1:56840400-56841400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr1:56840400-56841600	Enhancers	Psoas Muscle	Psoas
45	chr1:56840400-56841800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr1:56840400-56842000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr1:56840400-56842200	Enhancers	HMEC	breast
48	chr1:56840400-56842400	Weak transcription	Brain Substantia Nigra	brain
49	chr1:56840400-56842600	Enhancers	Osteobl	bone
50	chr1:56840400-56843200	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links