Variant report

Variant	rs12123400
Chromosome Location	chr1:165895462-165895463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10918311	0.88[EUR][1000 genomes]
rs12730968	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1663838	0.86[EUR][1000 genomes]
rs1663839	0.86[EUR][1000 genomes]
rs1934272	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1934273	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1934274	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35899976	1.00[ASN][1000 genomes]
rs36046806	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872509	chr1:165885147-165917109	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165858600-165902400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:165880800-165902600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:165883600-165896400	Weak transcription	Dnd41	blood
4	chr1:165894200-165895800	Enhancers	Thymus	Thymus
5	chr1:165894400-165896800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr1:165894400-165902400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:165894600-165902400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr1:165895400-165896200	Weak transcription	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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