Variant report

Variant	rs1934272
Chromosome Location	chr1:165897797-165897798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10918311	0.88[EUR][1000 genomes]
rs10918315	1.00[ASN][1000 genomes]
rs11577887	1.00[ASN][1000 genomes]
rs12120390	1.00[ASN][1000 genomes]
rs12123400	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12124634	1.00[ASN][1000 genomes]
rs12730968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13375130	1.00[ASN][1000 genomes]
rs1663838	0.96[EUR][1000 genomes]
rs1663839	0.96[EUR][1000 genomes]
rs16853627	1.00[ASN][1000 genomes]
rs16853832	1.00[ASN][1000 genomes]
rs1934273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1934274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34075422	1.00[ASN][1000 genomes]
rs35774572	1.00[ASN][1000 genomes]
rs61836675	1.00[ASN][1000 genomes]
rs6685404	1.00[ASN][1000 genomes]
rs6698004	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872509	chr1:165885147-165917109	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1934272	FAM78B	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165858600-165902400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:165880800-165902600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:165894400-165902400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:165894600-165902400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:165897000-165897800	Enhancers	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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