Variant report

Variant	rs12125005
Chromosome Location	chr1:95382742-95382743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11165272	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165274	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121091	0.81[EUR][1000 genomes]
rs12132647	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140798	0.81[EUR][1000 genomes]
rs12144222	0.81[EUR][1000 genomes]
rs12747335	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2275612	0.81[EUR][1000 genomes]
rs2275613	0.81[EUR][1000 genomes]
rs3789699	0.81[EUR][1000 genomes]
rs3818929	0.81[EUR][1000 genomes]
rs4847368	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95329000-95385000	Weak transcription	Colonic Mucosa	Colon
2	chr1:95357800-95390800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:95364000-95388600	Weak transcription	Fetal Brain Male	brain
4	chr1:95364800-95384800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:95368400-95388400	Weak transcription	Fetal Intestine Large	intestine
6	chr1:95368400-95390600	Weak transcription	Fetal Thymus	thymus
7	chr1:95369000-95388200	Weak transcription	Fetal Brain Female	brain
8	chr1:95372800-95385000	Weak transcription	Fetal Kidney	kidney
9	chr1:95374000-95384600	Weak transcription	Fetal Intestine Small	intestine
10	chr1:95375800-95384400	Weak transcription	Fetal Heart	heart
11	chr1:95375800-95385000	Weak transcription	A549	lung
12	chr1:95376000-95384800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr1:95376200-95384600	Weak transcription	Fetal Lung	lung
14	chr1:95376400-95383200	Weak transcription	HMEC	breast
15	chr1:95376400-95384800	Weak transcription	HUVEC	blood vessel
16	chr1:95376400-95385000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr1:95376600-95383400	Weak transcription	HSMMtube	muscle
18	chr1:95376600-95385000	Weak transcription	NHEK	skin
19	chr1:95376800-95383200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:95377200-95385400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr1:95378000-95383200	Weak transcription	Stomach Mucosa	stomach
22	chr1:95378000-95384000	Enhancers	Right Atrium	heart
23	chr1:95378200-95383200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:95378200-95385200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr1:95378400-95385200	Weak transcription	Placenta	Placenta
26	chr1:95378600-95384800	Weak transcription	Brain Angular Gyrus	brain
27	chr1:95378600-95385000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:95378600-95388600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr1:95378800-95384800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr1:95379000-95384400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr1:95379200-95384800	Weak transcription	Brain Substantia Nigra	brain
32	chr1:95379200-95384800	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr1:95379400-95383200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr1:95379400-95384600	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr1:95379400-95384800	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr1:95379600-95383000	Weak transcription	NH-A	brain
37	chr1:95379600-95383200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr1:95379800-95383200	Weak transcription	Osteobl	bone
39	chr1:95379800-95385000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr1:95379800-95385000	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr1:95379800-95385000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr1:95380000-95383200	Weak transcription	NHDF-Ad	bronchial
43	chr1:95380000-95383400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr1:95380000-95384600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr1:95380000-95384800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr1:95380200-95383000	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr1:95380200-95383400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr1:95380200-95383400	Weak transcription	Esophagus	oesophagus
49	chr1:95380200-95383800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr1:95380200-95384800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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