Variant report

Variant	rs11165274
Chromosome Location	chr1:95385572-95385573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11165272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121091	1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs12125005	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140798	0.84[EUR][1000 genomes]
rs12144222	1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs12747335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2275612	1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs2275613	0.84[EUR][1000 genomes]
rs3789699	1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs3818929	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs4847368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4847371	1.00[JPT][hapmap]
rs4847372	1.00[JPT][hapmap]
rs61772600	0.82[EUR][1000 genomes]
rs6670825	1.00[JPT][hapmap]
rs859054	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947291	chr1:95382933-95393244	Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95357800-95390800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:95364000-95388600	Weak transcription	Fetal Brain Male	brain
3	chr1:95368400-95388400	Weak transcription	Fetal Intestine Large	intestine
4	chr1:95368400-95390600	Weak transcription	Fetal Thymus	thymus
5	chr1:95369000-95388200	Weak transcription	Fetal Brain Female	brain
6	chr1:95378600-95388600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:95381400-95386400	Enhancers	Colon Smooth Muscle	Colon
8	chr1:95381600-95387400	Weak transcription	Psoas Muscle	Psoas
9	chr1:95382200-95385600	Weak transcription	Fetal Stomach	stomach
10	chr1:95382800-95386000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:95383200-95386000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:95383400-95388000	Genic enhancers	Fetal Muscle Leg	muscle
13	chr1:95383400-95388000	Enhancers	Ovary	ovary
14	chr1:95383400-95389400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:95383800-95386000	Enhancers	Right Ventricle	heart
16	chr1:95384200-95386800	Enhancers	Duodenum Mucosa	Duodenum
17	chr1:95384400-95386600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:95384400-95386600	Enhancers	Fetal Heart	heart
19	chr1:95384400-95387400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr1:95384600-95385600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr1:95384600-95386000	Enhancers	Osteobl	bone
22	chr1:95384600-95386200	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr1:95384600-95386200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:95384600-95386200	Enhancers	Fetal Lung	lung
25	chr1:95384600-95387200	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr1:95384600-95387400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr1:95384600-95388000	Enhancers	Adipose Nuclei	Adipose
28	chr1:95384600-95388400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr1:95384600-95389400	Genic enhancers	HepG2	liver
30	chr1:95384800-95385600	Enhancers	Brain Germinal Matrix	brain
31	chr1:95384800-95385600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr1:95384800-95385800	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr1:95384800-95385800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr1:95384800-95385800	Enhancers	Pancreas	Pancrea
35	chr1:95384800-95386000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr1:95384800-95386000	Enhancers	Stomach Mucosa	stomach
37	chr1:95384800-95386000	Flanking Active TSS	NHDF-Ad	bronchial
38	chr1:95384800-95386200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr1:95384800-95386200	Enhancers	Brain Angular Gyrus	brain
40	chr1:95384800-95386200	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr1:95384800-95386400	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr1:95384800-95386400	Enhancers	Placenta Amnion	Placenta Amnion
43	chr1:95384800-95386400	Enhancers	Small Intestine	intestine
44	chr1:95384800-95386800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr1:95384800-95386800	Enhancers	Brain Hippocampus Middle	brain
46	chr1:95384800-95387000	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr1:95384800-95387000	Enhancers	Left Ventricle	heart
48	chr1:95384800-95387200	Enhancers	Liver	Liver
49	chr1:95384800-95387600	Enhancers	Brain Cingulate Gyrus	brain
50	chr1:95384800-95388600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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