Variant report

Variant	rs6670825
Chromosome Location	chr1:95214409-95214410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11165274	1.00[JPT][hapmap]
rs1146267	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1246022	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1689176	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2781130	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2802094	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2991286	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3818929	1.00[JPT][hapmap]
rs4847368	1.00[JPT][hapmap]
rs9432570	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9432571	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95206000-95214600	Weak transcription	Fetal Intestine Large	intestine
2	chr1:95206200-95216600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:95211400-95215200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:95211800-95219200	Weak transcription	Pancreas	Pancrea
5	chr1:95212800-95219400	Weak transcription	Right Ventricle	heart
6	chr1:95213000-95215200	Weak transcription	Fetal Intestine Small	intestine
7	chr1:95213000-95218600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:95213200-95214800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:95213200-95220400	Weak transcription	Left Ventricle	heart
10	chr1:95213800-95216200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr1:95213800-95218800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:95214400-95215400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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