Variant report

Variant	rs1689176
Chromosome Location	chr1:95210609-95210610
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1146267	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1246022	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2781130	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2802094	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2991286	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6670825	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9432570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9432571	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95186200-95211400	Weak transcription	Gastric	stomach
2	chr1:95201400-95211400	Weak transcription	Pancreas	Pancrea
3	chr1:95201400-95211400	Weak transcription	Spleen	Spleen
4	chr1:95201400-95212600	Weak transcription	Right Atrium	heart
5	chr1:95203000-95212600	Weak transcription	Ovary	ovary
6	chr1:95203200-95212200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr1:95203400-95211400	Weak transcription	Stomach Mucosa	stomach
8	chr1:95203400-95212000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr1:95205600-95211400	Weak transcription	Placenta	Placenta
10	chr1:95205800-95212600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr1:95206000-95212600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:95206000-95214600	Weak transcription	Fetal Intestine Large	intestine
13	chr1:95206200-95216600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:95207400-95211600	Weak transcription	NHDF-Ad	bronchial
15	chr1:95207600-95211600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:95208000-95211600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr1:95208200-95211800	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr1:95208400-95211400	Weak transcription	Adipose Nuclei	Adipose
19	chr1:95208400-95211800	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr1:95208600-95210800	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr1:95210000-95211600	Enhancers	Lung	lung
22	chr1:95210000-95211600	Weak transcription	NHLF	lung
23	chr1:95210200-95211400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr1:95210200-95211800	Weak transcription	Brain Anterior Caudate	brain
25	chr1:95210200-95212200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr1:95210200-95212600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:95210200-95212600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr1:95210200-95212600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr1:95210200-95212600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr1:95210200-95212800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:95210400-95212000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr1:95210400-95212600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr1:95210400-95212600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr1:95210400-95212600	Weak transcription	Left Ventricle	heart
35	chr1:95210400-95212600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr1:95210600-95210800	Weak transcription	Fetal Intestine Small	intestine
37	chr1:95210600-95212600	Weak transcription	Fetal Muscle Leg	muscle

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