Variant report

Variant	rs2802094
Chromosome Location	chr1:95230530-95230531
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1146267	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1246022	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12562602	1.00[MEX][hapmap]
rs1689176	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2781130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2991286	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4847359	1.00[GIH][hapmap]
rs6670825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9432570	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9432571	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95221400-95234600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:95221600-95239000	Weak transcription	Fetal Intestine Large	intestine
3	chr1:95222000-95234000	Weak transcription	Fetal Intestine Small	intestine
4	chr1:95223800-95241600	Weak transcription	Aorta	Aorta
5	chr1:95224000-95237800	Weak transcription	NHLF	lung
6	chr1:95224800-95237000	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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