Variant report

Variant	rs4847371
Chromosome Location	chr1:95423569-95423570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr1:95423539-95424079	HepG2	liver:	n/a	n/a
2	MAX	chr1:95423492-95424145	HepG2	liver:	n/a	n/a
3	FOXA1	chr1:95423560-95423980	HepG2	liver:	n/a	n/a
4	FOXA1	chr1:95423552-95424011	HepG2	liver:	n/a	n/a
5	MYBL2	chr1:95423553-95424175	HepG2	liver:	n/a	n/a
6	HNF4A	chr1:95423553-95424058	HepG2	liver:	n/a	chr1:95423858-95423873 chr1:95423906-95423921

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95421951..95424595-chr1:95431431..95434214,2	K562	blood:

Variant related genes	Relation type
ENSG00000235501	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11165274	1.00[JPT][hapmap]
rs12123807	1.00[MEX][hapmap]
rs12136043	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2148365	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2797625	0.89[CHB][hapmap];1.00[CHD][hapmap];0.82[TSI][hapmap];0.91[ASN][1000 genomes]
rs34542809	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34873525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35558519	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3818929	1.00[JPT][hapmap]
rs4847368	1.00[ASW][hapmap];1.00[JPT][hapmap]
rs4847372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4847374	1.00[MEX][hapmap]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95413200-95427600	Weak transcription	Colonic Mucosa	Colon
2	chr1:95415800-95428400	Weak transcription	Lung	lung
3	chr1:95416000-95427400	Weak transcription	A549	lung
4	chr1:95417800-95424600	Enhancers	HepG2	liver
5	chr1:95420400-95424000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:95420800-95426000	Weak transcription	Placenta	Placenta
7	chr1:95421600-95426200	Weak transcription	Fetal Thymus	thymus
8	chr1:95421600-95428200	Weak transcription	Aorta	Aorta
9	chr1:95421600-95428200	Weak transcription	Fetal Kidney	kidney
10	chr1:95421600-95429200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr1:95421600-95429600	Weak transcription	Spleen	Spleen
12	chr1:95421800-95425800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:95421800-95426200	Weak transcription	Fetal Muscle Leg	muscle
14	chr1:95421800-95426800	Weak transcription	Adipose Nuclei	Adipose
15	chr1:95421800-95427200	Weak transcription	Stomach Mucosa	stomach
16	chr1:95421800-95427400	Weak transcription	HSMMtube	muscle
17	chr1:95421800-95427600	Weak transcription	Brain Hippocampus Middle	brain
18	chr1:95421800-95427600	Weak transcription	Fetal Lung	lung
19	chr1:95421800-95428200	Weak transcription	Right Ventricle	heart
20	chr1:95421800-95428200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr1:95421800-95428400	Weak transcription	Left Ventricle	heart
22	chr1:95422000-95425800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr1:95422000-95426000	Weak transcription	Small Intestine	intestine
24	chr1:95422000-95426600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr1:95422000-95426800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:95422000-95426800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr1:95422000-95427000	Weak transcription	Fetal Intestine Small	intestine
28	chr1:95422000-95427600	Weak transcription	Colon Smooth Muscle	Colon
29	chr1:95422000-95428200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr1:95422000-95428600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr1:95422000-95450800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr1:95422400-95426800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:95422400-95426800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr1:95422800-95423600	Weak transcription	Duodenum Mucosa	Duodenum
35	chr1:95422800-95423800	Weak transcription	Liver	Liver
36	chr1:95422800-95428600	Weak transcription	Esophagus	oesophagus
37	chr1:95423400-95423600	Enhancers	Fetal Heart	heart

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