Variant report

Variant	rs34542809
Chromosome Location	chr1:95403786-95403787
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95402811..95405295-chr1:95450498..95453342,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12136043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2148365	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2797625	0.89[ASN][1000 genomes]
rs34873525	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35558519	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4847371	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4847372	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95393600-95404000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:95394000-95415600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:95395400-95404000	Weak transcription	Brain Angular Gyrus	brain
4	chr1:95395400-95410400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:95395600-95403800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:95395600-95403800	Weak transcription	Gastric	stomach
7	chr1:95395600-95403800	Weak transcription	Right Ventricle	heart
8	chr1:95395600-95404200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:95395600-95407000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr1:95395600-95412400	Weak transcription	Colonic Mucosa	Colon
11	chr1:95395600-95412400	Weak transcription	Pancreas	Pancrea
12	chr1:95395600-95416400	Weak transcription	Brain Hippocampus Middle	brain
13	chr1:95395800-95408600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr1:95396000-95407800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr1:95399200-95404000	Weak transcription	Adipose Nuclei	Adipose
16	chr1:95399400-95403800	Weak transcription	Left Ventricle	heart
17	chr1:95399400-95412200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr1:95399400-95412400	Weak transcription	Fetal Stomach	stomach
19	chr1:95399400-95415400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr1:95399400-95418800	Weak transcription	Ovary	ovary
21	chr1:95400200-95404000	Enhancers	HUVEC	blood vessel
22	chr1:95400200-95404400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr1:95400400-95404200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:95400400-95405000	Enhancers	Hela-S3	cervix
25	chr1:95400600-95404400	Enhancers	NH-A	brain
26	chr1:95400600-95404400	Enhancers	Osteobl	bone
27	chr1:95400600-95405200	Enhancers	A549	lung
28	chr1:95401200-95404200	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr1:95401200-95404200	Enhancers	HSMMtube	muscle
30	chr1:95401400-95404200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr1:95401400-95404200	Enhancers	Placenta Amnion	Placenta Amnion
32	chr1:95401800-95404000	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr1:95401800-95404200	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr1:95401800-95404200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr1:95401800-95404200	Enhancers	Rectal Smooth Muscle	rectum
36	chr1:95401800-95404200	Enhancers	NHLF	lung
37	chr1:95401800-95405000	Enhancers	HSMM	muscle
38	chr1:95401800-95405000	Enhancers	NHDF-Ad	bronchial
39	chr1:95401800-95405200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr1:95401800-95405400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr1:95402000-95403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr1:95402000-95403800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr1:95402000-95403800	Weak transcription	Aorta	Aorta
44	chr1:95402000-95403800	Weak transcription	Fetal Muscle Leg	muscle
45	chr1:95402000-95405200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr1:95402200-95403800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr1:95402200-95403800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr1:95402200-95406000	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr1:95402400-95419400	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr1:95402600-95403800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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