Variant report

Variant	rs12144222
Chromosome Location	chr1:95351220-95351221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95350050..95353595-chr1:95355510..95359061,4	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11165272	0.84[EUR][1000 genomes]
rs11165274	1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs12121091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12125005	0.81[EUR][1000 genomes]
rs12132647	0.84[EUR][1000 genomes]
rs12140798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12747335	0.84[EUR][1000 genomes]
rs2275612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2275613	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3789699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3818929	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4847368	1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs61772600	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs859054	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95329000-95385000	Weak transcription	Colonic Mucosa	Colon
2	chr1:95333200-95370000	Weak transcription	Small Intestine	intestine
3	chr1:95340200-95361200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:95342600-95356000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:95343400-95361400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:95344600-95356000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr1:95346400-95353800	Strong transcription	Fetal Intestine Small	intestine
8	chr1:95347800-95354800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:95348000-95354400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr1:95348200-95352400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:95348400-95360200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:95348600-95351600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:95348800-95351400	Enhancers	Ovary	ovary
14	chr1:95348800-95351400	Enhancers	HSMMtube	muscle
15	chr1:95348800-95354800	Enhancers	H1 Cell Line	embryonic stem cell
16	chr1:95348800-95354800	Enhancers	Fetal Muscle Leg	muscle
17	chr1:95348800-95360800	Weak transcription	Lung	lung
18	chr1:95349000-95352400	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr1:95349000-95357800	Weak transcription	Pancreas	Pancrea
20	chr1:95349800-95359800	Weak transcription	HUVEC	blood vessel
21	chr1:95349800-95364200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr1:95350000-95351600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr1:95350000-95351600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr1:95350000-95351800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr1:95350000-95356800	Weak transcription	Liver	Liver
26	chr1:95350000-95357800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:95350000-95357800	Weak transcription	Left Ventricle	heart
28	chr1:95350000-95360800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr1:95350200-95351800	Enhancers	Stomach Smooth Muscle	stomach
30	chr1:95350200-95356600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr1:95350200-95358400	Weak transcription	Stomach Mucosa	stomach
32	chr1:95350200-95361000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr1:95350200-95361000	Weak transcription	Adipose Nuclei	Adipose
34	chr1:95350200-95361000	Weak transcription	Fetal Heart	heart
35	chr1:95350200-95361400	Weak transcription	A549	lung
36	chr1:95350400-95351600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr1:95350400-95351600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr1:95350400-95351600	Weak transcription	Fetal Stomach	stomach
39	chr1:95350400-95351800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr1:95350400-95352000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr1:95350400-95352000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr1:95350400-95352200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr1:95350400-95352200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr1:95350400-95354600	Weak transcription	HMEC	breast
45	chr1:95350400-95355800	Weak transcription	HSMM	muscle
46	chr1:95350400-95356000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr1:95350400-95356000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr1:95350400-95356000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr1:95350400-95356600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr1:95350400-95356600	Weak transcription	Osteobl	bone

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