Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10754193	1.00[ASN][1000 genomes]
rs12117379	1.00[ASN][1000 genomes]
rs12128003	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128544	1.00[ASN][1000 genomes]
rs12133309	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133639	1.00[ASN][1000 genomes]
rs12136798	1.00[ASN][1000 genomes]
rs12144706	1.00[ASN][1000 genomes]
rs12239898	1.00[ASN][1000 genomes]
rs13375443	1.00[ASN][1000 genomes]
rs13375567	1.00[ASN][1000 genomes]
rs16840379	1.00[EUR][1000 genomes]
rs17573867	1.00[EUR][1000 genomes]
rs2335906	1.00[ASN][1000 genomes]
rs28620995	1.00[ASN][1000 genomes]
rs34683486	1.00[EUR][1000 genomes]
rs35229136	1.00[EUR][1000 genomes]
rs35836460	1.00[EUR][1000 genomes]
rs4314834	1.00[ASN][1000 genomes]
rs4507960	1.00[EUR][1000 genomes]
rs4515738	1.00[ASN][1000 genomes]
rs4658040	1.00[ASN][1000 genomes]
rs487114	1.00[EUR][1000 genomes]
rs499807	1.00[EUR][1000 genomes]
rs512900	1.00[EUR][1000 genomes]
rs58257510	1.00[ASN][1000 genomes]
rs6428351	1.00[EUR][1000 genomes]
rs6663649	1.00[ASN][1000 genomes]
rs6691524	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73069765	1.00[ASN][1000 genomes]
rs73069770	1.00[ASN][1000 genomes]
rs7523548	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7533533	1.00[ASN][1000 genomes]
rs7540922	1.00[ASN][1000 genomes]
rs7551203	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196480800-196504800	Weak transcription	Liver	Liver
2	chr1:196486200-196491600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:196486200-196492200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:196486400-196492000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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