Variant report

Variant	rs6428351
Chromosome Location	chr1:196580901-196580902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12128003	1.00[EUR][1000 genomes]
rs12130004	1.00[EUR][1000 genomes]
rs12133309	1.00[EUR][1000 genomes]
rs16840379	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17573867	1.00[EUR][1000 genomes]
rs34683486	1.00[EUR][1000 genomes]
rs35229136	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35836460	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4507960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs480266	0.94[AMR][1000 genomes]
rs487114	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs499807	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs512900	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs539917	0.94[AMR][1000 genomes]
rs558024	0.94[AMR][1000 genomes]
rs6428350	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6691524	0.83[EUR][1000 genomes]
rs7523548	1.00[EUR][1000 genomes]
rs7551203	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196578600-196581000	Weak transcription	Psoas Muscle	Psoas
2	chr1:196578800-196581000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:196579000-196581200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:196579000-196581400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:196579400-196581200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr1:196579600-196581200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:196580000-196581400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr1:196580200-196581400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr1:196580400-196581400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr1:196580600-196581000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr1:196580600-196581000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr1:196580600-196581000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:196580600-196581400	Enhancers	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links