Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10754193	0.83[ASN][1000 genomes]
rs12117379	0.83[ASN][1000 genomes]
rs12128003	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12128544	0.83[ASN][1000 genomes]
rs12130004	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12133309	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12133639	0.83[ASN][1000 genomes]
rs12136798	0.83[ASN][1000 genomes]
rs12144706	0.83[ASN][1000 genomes]
rs12239898	0.83[ASN][1000 genomes]
rs13375443	0.83[ASN][1000 genomes]
rs13375567	0.83[ASN][1000 genomes]
rs16840379	0.83[EUR][1000 genomes]
rs17573867	0.83[EUR][1000 genomes]
rs2335906	0.83[ASN][1000 genomes]
rs28620995	0.83[ASN][1000 genomes]
rs34683486	0.83[EUR][1000 genomes]
rs35229136	0.83[EUR][1000 genomes]
rs35836460	0.83[EUR][1000 genomes]
rs4314834	0.83[ASN][1000 genomes]
rs4507960	0.83[EUR][1000 genomes]
rs4515738	0.83[ASN][1000 genomes]
rs4658040	0.83[ASN][1000 genomes]
rs487114	0.83[EUR][1000 genomes]
rs499807	0.83[EUR][1000 genomes]
rs512900	0.83[EUR][1000 genomes]
rs58257510	0.83[ASN][1000 genomes]
rs6428351	0.83[EUR][1000 genomes]
rs6663649	0.83[ASN][1000 genomes]
rs73069765	0.83[ASN][1000 genomes]
rs73069770	0.83[ASN][1000 genomes]
rs7523548	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7533533	0.83[ASN][1000 genomes]
rs7540922	0.83[ASN][1000 genomes]
rs7551203	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv508685	chr1:196524030-196550980	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196527800-196546200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:196527800-196559400	Weak transcription	Ovary	ovary
3	chr1:196531600-196539200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:196534200-196539000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:196534600-196541000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr1:196534600-196547200	Weak transcription	Liver	Liver
7	chr1:196534800-196547400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:196535800-196538600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:196535800-196547200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:196537000-196538000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr1:196537200-196541000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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