Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10754036	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10921300	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12117621	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12118267	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12124274	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12125252	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12132131	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12133295	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12138298	0.81[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12143913	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1339591	0.89[EUR][1000 genomes]
rs17525308	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2486496	0.89[EUR][1000 genomes]
rs6680068	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72738564	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72738565	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72738572	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72738574	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7415619	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs842805	0.89[EUR][1000 genomes]
rs842815	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192890000-192895200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:192890200-192895200	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:192894600-192896000	Enhancers	Fetal Heart	heart

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