Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:192895816..192898455-chr1:192898887..192900802,2	MCF-7	breast:
2	chr1:192895978..192897609-chr1:192900333..192902139,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10754036	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10921299	0.80[AMR][1000 genomes]
rs10921300	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12117621	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12118267	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12125252	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12132131	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12133193	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12133295	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12138298	0.90[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12143913	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1339591	0.97[EUR][1000 genomes]
rs17525308	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2066216	0.81[EUR][1000 genomes]
rs2486496	0.97[EUR][1000 genomes]
rs28461227	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35686688	0.83[EUR][1000 genomes]
rs6680068	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72738564	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72738565	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72738572	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72738574	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7415619	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs842805	0.89[CEU][hapmap];0.97[EUR][1000 genomes]
rs842815	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192895200-192897600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:192895200-192897600	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr1:192896800-192897200	Weak transcription	Brain Hippocampus Middle	brain

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