Variant report

Variant	rs28461227
Chromosome Location	chr1:192900136-192900137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:192895816..192898455-chr1:192898887..192900802,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10754036	0.81[EUR][1000 genomes]
rs10801165	0.99[EUR][1000 genomes]
rs10921296	0.89[EUR][1000 genomes]
rs10921298	0.89[EUR][1000 genomes]
rs10921299	0.89[EUR][1000 genomes]
rs11507871	0.88[EUR][1000 genomes]
rs11507872	0.89[EUR][1000 genomes]
rs12124274	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12132131	0.81[EUR][1000 genomes]
rs12133295	0.92[AMR][1000 genomes]
rs12138298	0.81[EUR][1000 genomes]
rs1339591	0.81[EUR][1000 genomes]
rs1339593	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1615218	0.89[EUR][1000 genomes]
rs17525308	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1769054	0.84[EUR][1000 genomes]
rs2066216	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2486496	0.81[EUR][1000 genomes]
rs6428143	0.89[EUR][1000 genomes]
rs6680068	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6701258	0.89[EUR][1000 genomes]
rs710140	0.99[EUR][1000 genomes]
rs710141	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72738564	0.81[EUR][1000 genomes]
rs72738565	0.81[EUR][1000 genomes]
rs72738576	0.89[EUR][1000 genomes]
rs72738577	0.89[EUR][1000 genomes]
rs72738582	0.89[EUR][1000 genomes]
rs7512163	0.89[EUR][1000 genomes]
rs7512241	0.89[EUR][1000 genomes]
rs7513985	0.89[EUR][1000 genomes]
rs7547423	0.89[EUR][1000 genomes]
rs842792	0.99[EUR][1000 genomes]
rs842793	0.99[EUR][1000 genomes]
rs842794	0.99[EUR][1000 genomes]
rs842798	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs842802	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs842803	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs842805	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs842812	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs842815	0.81[EUR][1000 genomes]
rs844528	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9427824	0.89[EUR][1000 genomes]
rs9427825	0.89[EUR][1000 genomes]
rs946557	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192897600-192903800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr1:192898400-192901000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr1:192898600-192900800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr1:192898800-192901400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:192899000-192901000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:192899600-192900400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:192899600-192902200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr1:192899800-192900200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:192899800-192900400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr1:192899800-192900600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr1:192899800-192900800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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