Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10754036	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10801170	1.00[GIH][hapmap]
rs10921300	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12117621	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12118267	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12123511	1.00[GIH][hapmap]
rs12124274	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12125252	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12132131	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12132305	1.00[GIH][hapmap]
rs12133193	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12138298	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12143913	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1339591	0.95[EUR][1000 genomes]
rs17525308	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2486496	0.95[EUR][1000 genomes]
rs28461227	0.92[AMR][1000 genomes]
rs2887640	1.00[GIH][hapmap]
rs35686688	0.81[EUR][1000 genomes]
rs6680068	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72738564	0.95[EUR][1000 genomes]
rs72738565	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72738572	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72738574	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7415619	1.00[GIH][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs842805	1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs842815	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12133295	GLRX2	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192894600-192896000	Enhancers	Fetal Heart	heart
2	chr1:192895200-192895800	Enhancers	Colon Smooth Muscle	Colon
3	chr1:192895200-192895800	Enhancers	Duodenum Smooth Muscle	Duodenum
4	chr1:192895200-192897600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr1:192895200-192897600	Enhancers	Monocytes-CD14+_RO01746	blood

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