Variant report

Variant	rs12135905
Chromosome Location	chr1:77712637-77712638
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10518441	0.96[ASN][1000 genomes]
rs12131286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12726581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17100051	0.92[ASN][1000 genomes]
rs17100082	0.96[ASN][1000 genomes]
rs34651353	0.96[ASN][1000 genomes]
rs4949784	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432398	chr1:77707391-77740836	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77707000-77713200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:77707800-77713000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr1:77709200-77713200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:77712000-77714200	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:77712400-77713800	Weak transcription	Brain Anterior Caudate	brain
6	chr1:77712400-77714000	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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