Variant report

Variant	rs12726581
Chromosome Location	chr1:77713447-77713448
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10518441	0.96[ASN][1000 genomes]
rs12131286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17100051	0.92[ASN][1000 genomes]
rs17100082	0.96[ASN][1000 genomes]
rs34651353	0.96[ASN][1000 genomes]
rs4949784	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432398	chr1:77707391-77740836	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77712000-77714200	Weak transcription	Brain Hippocampus Middle	brain
2	chr1:77712400-77713800	Weak transcription	Brain Anterior Caudate	brain
3	chr1:77712400-77714000	Weak transcription	Brain Substantia Nigra	brain
4	chr1:77713000-77713600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
5	chr1:77713000-77713600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
6	chr1:77713200-77713600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:77713200-77713600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:77713200-77713600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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