Variant report
| Variant | rs10518441 |
|---|---|
| Chromosome Location | chr1:77726980-77726981 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:77725962..77727892-chr1:77729929..77731695,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:61)
| rs_ID | r2[population] |
|---|---|
| rs10493600 | 1.00[JPT][hapmap] |
| rs10518551 | 1.00[JPT][hapmap] |
| rs10518553 | 1.00[JPT][hapmap] |
| rs1098125 | 1.00[JPT][hapmap] |
| rs1098130 | 1.00[JPT][hapmap] |
| rs12131286 | 0.96[ASN][1000 genomes] |
| rs12135905 | 0.96[ASN][1000 genomes] |
| rs1253226 | 1.00[JPT][hapmap] |
| rs1266316 | 1.00[JPT][hapmap] |
| rs12722930 | 1.00[JPT][hapmap] |
| rs12723684 | 1.00[JPT][hapmap] |
| rs12726581 | 0.96[ASN][1000 genomes] |
| rs12733865 | 1.00[JPT][hapmap] |
| rs12736701 | 1.00[JPT][hapmap] |
| rs12736719 | 1.00[JPT][hapmap] |
| rs12737795 | 1.00[JPT][hapmap] |
| rs12743614 | 1.00[JPT][hapmap] |
| rs12751439 | 1.00[JPT][hapmap] |
| rs12755514 | 1.00[JPT][hapmap] |
| rs12760157 | 1.00[JPT][hapmap] |
| rs1419249 | 1.00[JPT][hapmap] |
| rs1502529 | 1.00[JPT][hapmap] |
| rs1615806 | 1.00[JPT][hapmap] |
| rs17100022 | 1.00[JPT][hapmap] |
| rs17100051 | 0.96[ASN][1000 genomes] |
| rs17100082 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17100530 | 1.00[JPT][hapmap] |
| rs1721145 | 1.00[JPT][hapmap] |
| rs1721151 | 1.00[JPT][hapmap] |
| rs17371324 | 1.00[JPT][hapmap] |
| rs17379910 | 1.00[JPT][hapmap] |
| rs17380099 | 1.00[JPT][hapmap] |
| rs1779198 | 1.00[JPT][hapmap] |
| rs1829913 | 1.00[JPT][hapmap] |
| rs2004962 | 0.82[ASW][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.82[AFR][1000 genomes] |
| rs2069225 | 1.00[JPT][hapmap] |
| rs2256735 | 1.00[JPT][hapmap] |
| rs2647514 | 1.00[JPT][hapmap] |
| rs2647515 | 1.00[JPT][hapmap] |
| rs2647517 | 1.00[JPT][hapmap] |
| rs2647519 | 1.00[JPT][hapmap] |
| rs2762882 | 1.00[JPT][hapmap] |
| rs2799564 | 1.00[JPT][hapmap] |
| rs2882289 | 1.00[JPT][hapmap] |
| rs3104461 | 1.00[JPT][hapmap] |
| rs34651353 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4402168 | 1.00[JPT][hapmap] |
| rs56666939 | 0.82[AFR][1000 genomes] |
| rs6703133 | 1.00[JPT][hapmap] |
| rs7415865 | 1.00[JPT][hapmap] |
| rs7522727 | 1.00[JPT][hapmap] |
| rs839795 | 1.00[JPT][hapmap] |
| rs839800 | 1.00[JPT][hapmap] |
| rs839808 | 1.00[JPT][hapmap] |
| rs839810 | 1.00[JPT][hapmap] |
| rs839813 | 1.00[JPT][hapmap] |
| rs839818 | 1.00[JPT][hapmap] |
| rs839822 | 1.00[JPT][hapmap] |
| rs839823 | 1.00[JPT][hapmap] |
| rs839826 | 1.00[JPT][hapmap] |
| rs839830 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv432398 | chr1:77707391-77740836 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:77724200-77727000 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
